BLASTX alignment cluster 9    (82913..87034)

Local alignments in this cluster

gi|4006831[fasta] (AC005970) putative reverse transcriptase [Arabidopsis thaliana]
Length 1200 aa
position (link: detail on the area) subject position direction score
82913..83065 (1..51) + 382
83132..83500 (32..154) + 443
83711..83764 (198..215) + 65
83750..83869 (215..254) + 86
83873..85165 (254..684) + 1733
85361..85903 (752..932) + 744
86060..86410 (941..1057) + 282
86402..86560 (1037..1089) + 200
86708..87034 (1090..1198) + 417

gi|4263547|gb|AAD15361|[fasta] (AC006250) putative retrotransposon pol protein [Arabidopsis thaliana]
Length 767 aa
position (link: detail on the area) subject position direction score
83753..84766 (26..363) + 194
85049..85165 (363..401) + 145
85592..85999 (473..608) + 558
86390..86500 (614..650) + 113
86495..86848 (650..767) + 477

gi|4335731|gb|AAD17409|[fasta] (AC006248) putative polyprotein [Arabidopsis thaliana]
Length 1347 aa
position (link: detail on the area) subject position direction score
82961..83074 (4..41) + 434
83081..83398 (65..170) + 133
83399..83593 (170..234) + 70
83660..83728 (265..287) + 81
83762..84049 (286..381) + 101
84041..84175 (378..422) + 79
84281..84661 (456..582) + 323
84698..84910 (585..655) + 194
84908..85168 (656..742) + 176
85442..86266 (831..1105) + 617
86288..86974 (1115..1343) + 478

gi|3777527[fasta] (AF053008) gag-pol polyprotein [Glycine max]
Length 1550 aa
position (link: detail on the area) subject position direction score
83090..83428 (53..165) + 211
83687..83794 (275..310) + 59
83882..84052 (536..592) + 98
84269..84376 (662..697) + 88
84371..85174 (697..964) + 473
85457..86722 (1041..1462) + 806
86762..86971 (1475..1544) + 172

gi|130582|sp|P10978|POLX_TOBAC[fasta] RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON TNT 1-94 [CONTAINS: PROTEASE ; REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
gi|100342|pir||S04273 hypothetical protein - common tobacco
gi|20045|emb|CAA32025| (X13777) ORF [Nicotiana tabacum]
Length 1328 aa
position (link: detail on the area) subject position direction score
83687..83791 (232..266) + 71
83873..84097 (291..365) + 91
84170..84346 (388..446) + 68
84428..85141 (471..708) + 519
85484..86008 (822..996) + 459
86183..86320 (1058..1103) + 80
86363..86494 (1125..1168) + 128
86516..86725 (1175..1244) + 153
86741..86971 (1249..1325) + 173

gi|1167523|dbj|BAA11674|[fasta] (D83003) ORF(AA 1-1338) [Nicotiana tabacum]
Length 1338 aa
position (link: detail on the area) subject position direction score
83882..84121 (292..371) + 908
84170..84376 (386..454) + 85
84365..84502 (449..494) + 106
84518..84691 (499..556) + 144
84692..85141 (556..705) + 285
85490..86008 (825..997) + 422
86183..86338 (1059..1110) + 76
86363..86506 (1126..1173) + 131
86516..86725 (1176..1245) + 155
86753..86977 (1254..1328) + 149

gi|4263650|gb|AAD15372|[fasta] (AC006136) putative reverse transcriptase [Arabidopsis thaliana]
Length 469 aa
position (link: detail on the area) subject position direction score
84857..85180 (2..109) + 752
85319..85828 (110..279) + 656
86063..86338 (273..364) + 238
86592..86747 (380..431) + 138
86758..86844 (435..463) + 71

gi|4416302|gb|AAD20307|[fasta] (AF105716) copia-type pol polyprotein [Zea mays]
Length 1063 aa
position (link: detail on the area) subject position direction score
84050..84379 (45..154) + 402
84380..85135 (156..407) + 467
85427..85567 (543..589) + 76
85583..86005 (594..734) + 364
86123..86755 (774..984) + 356
86729..86977 (975..1057) + 155

gi|4567277|gb|AAD23690.1|AC006841_18[fasta] (AC006841) putative pol protein with Zn finger CCHC type domain [Arabidopsis thaliana]
Length 1333 aa
position (link: detail on the area) subject position direction score
83864..84181 (281..386) + 119
84269..84346 (415..440) + 62
84488..84997 (486..655) + 338
85013..85150 (658..703) + 75
85493..85627 (828..872) + 103
85637..86005 (877..999) + 322
86168..86338 (1057..1113) + 90
86354..86722 (1126..1248) + 286
86741..86974 (1254..1331) + 141

gi|2586082[fasta] (U72725) retrofit [Oryza longistaminata]
Length 1445 aa
position (link: detail on the area) subject position direction score
83861..83926 (314..335) + 187
84497..84676 (526..585) + 128
84755..85135 (611..737) + 254
85457..85999 (936..1116) + 465
86126..86287 (1159..1212) + 128
86312..86929 (1223..1428) + 402

gi|4388818|gb|AAD19773|[fasta] (AC006528) putative pol polyprotein with a Zn-finger CCHC type domain (prosite:QDOC50158) and a DDE integrase signature motif [Arabidopsis thaliana]
Length 1335 aa
position (link: detail on the area) subject position direction score
83870..84157 (281..376) + 354
84257..84337 (409..435) + 60
84371..84997 (445..653) + 371
85013..85150 (656..701) + 69
85490..85627 (829..874) + 117
85646..86008 (882..1002) + 294
86177..86323 (1062..1110) + 71
86354..86725 (1128..1251) + 289
86726..86977 (1251..1334) + 115

gi|3402755|emb|CAA20201.1|[fasta] (AL031187) putative transposable element [Arabidopsis thaliana]
Length 1308 aa
position (link: detail on the area) subject position direction score
83882..84121 (309..388) + 457
84260..84346 (434..462) + 68
84518..85012 (508..672) + 349
85013..85150 (670..715) + 77
85466..85627 (825..878) + 106
85637..86005 (883..1005) + 320
86174..86302 (1065..1107) + 84
86354..86419 (1129..1150) + 58
86513..86725 (1155..1225) + 169
86714..86974 (1221..1307) + 146

gi|3645899[fasta] (U68408) 5' end not determined experimentally [Zea mays]
Length 1068 aa
position (link: detail on the area) subject position direction score
83882..83935 (11..28) + 588
84281..84379 (144..176) + 94
84383..85135 (179..429) + 439
85427..85567 (549..595) + 65
85583..86005 (600..740) + 365
86123..86722 (780..979) + 352
86729..86977 (981..1063) + 158

gi|3687234[fasta] (AC005169) putative copia-like transposable element [Arabidopsis thaliana]
Length 1137 aa
position (link: detail on the area) subject position direction score
83867..84034 (261..316) + 72
84539..84997 (319..471) + 304
85013..85150 (474..519) + 72
85496..85612 (649..687) + 111
85637..85999 (697..817) + 300
86177..86338 (880..933) + 75
86354..86578 (946..1020) + 163
86630..86725 (1022..1053) + 89
86726..86971 (1053..1134) + 164

gi|1769898|emb|CAA69272|[fasta] (Y08010) lectin receptor kinase [Arabidopsis thaliana]
Length 623 aa
position (link: detail on the area) subject position direction score
84404..85186 (6..266) + 114
85457..86314 (334..619) + 752

gi|85105|pir||S00954[fasta] pol polyprotein - fruit fly (Drosophila melanogaster) transposon 1731
gi|8702|emb|CAA30503| (X07656) pol polypeptide (AA 1-982) [Drosophila melanogaster]
Length 982 aa
position (link: detail on the area) subject position direction score
84047..84181 (66..110) + 110
84281..84364 (139..166) + 76
84380..85135 (173..424) + 551
85493..85999 (529..697) + 435
86357..86500 (821..868) + 83
86522..86728 (875..943) + 171
86768..86839 (959..982) + 78

gi|4572668|gb|AAD23883.1|AC006954_4[fasta] (AC006954) putative retrotransposon polyprotein [Arabidopsis thaliana]
Length 1156 aa
position (link: detail on the area) subject position direction score
84443..84685 (140..220) + 851
84719..85138 (230..369) + 277
85391..85852 (616..769) + 355
85871..85999 (775..817) + 102
86126..86725 (860..1059) + 370
86792..86980 (1061..1123) + 147

gi|4512618|gb|AAD21687.1|[fasta] (AC004793) Strong similarity togi|3600044 T12H20.12 protease homolog from Arabidopsis thaliana BAC gb|AF080119 and is a member of the reverse transcriptase family PF|00078.
Length 1415 aa
position (link: detail on the area) subject position direction score
83330..83593 (156..243) + 950
84458..85141 (512..739) + 415
85445..86278 (855..1132) + 495
86258..86971 (1124..1361) + 404

gi|2642431[fasta] (AC002391) putative retrotransposon polyprotein [Arabidopsis thaliana]
Length 1496 aa
position (link: detail on the area) subject position direction score
84464..84685 (559..632) + 404
84719..85138 (642..781) + 248
85442..85852 (981..1117) + 389
85874..86977 (1124..1491) + 588

gi|3319362[fasta] (AF077408) contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
Length 964 aa
position (link: detail on the area) subject position direction score
84239..84328 (70..99) + 888
84377..84424 (114..129) + 57
84443..84904 (135..288) + 345
84905..84991 (288..316) + 81
85493..86170 (456..681) + 476
86183..86323 (688..734) + 73
86354..86725 (752..875) + 260
86762..86974 (890..960) + 126

gi|4388829|gb|AAD19784|[fasta] (AC006528) putative pol polyprotein with a Zn-finger CCHC type domain (prosite:QDOC50158) and a DDE integrase signature motif [Arabidopsis thaliana]
Length 1501 aa
position (link: detail on the area) subject position direction score
83888..84019 (403..446) + 110
84464..84685 (586..659) + 134
84716..85138 (668..808) + 257
85391..85852 (969..1122) + 351
85871..85999 (1128..1170) + 106
86126..86980 (1213..1497) + 502

gi|2961349|emb|CAA18107.1|[fasta] (AL022140) LTR retrotransposon like protein [Arabidopsis thaliana]
Length 1109 aa
position (link: detail on the area) subject position direction score
84047..84148 (214..247) + 78
84443..84685 (342..422) + 155
84719..85135 (432..570) + 246
85457..85852 (599..730) + 366
85874..85999 (737..778) + 106
86126..86980 (821..1105) + 469

gi|99721|pir||S05465[fasta] retrovirus-related polyprotein - Arabidopsis thaliana retrotransposon Ta1-3
gi|16534|emb|CAA31653| (X13291) polyprotein [Arabidopsis thaliana]
Length 1291 aa
position (link: detail on the area) subject position direction score
83453..83596 (202..249) + 106
83864..84121 (312..397) + 122
84245..84346 (438..471) + 82
84515..85012 (526..691) + 340
85013..85150 (689..734) + 75
85406..85627 (831..904) + 130
85637..86008 (909..1032) + 304
86354..86725 (1155..1278) + 267

gi|4335736|gb|AAD17414|[fasta] (AC006248) putative copia polyprotein [Arabidopsis thaliana]
Length 1166 aa
position (link: detail on the area) subject position direction score
83867..84061 (279..343) + 115
84518..84985 (401..556) + 360
85013..85150 (563..608) + 70
85475..85627 (741..791) + 121
85637..86005 (796..918) + 319
86354..86725 (998..1121) + 284
86747..86836 (1128..1157) + 72

gi|4539406|emb|CAB40039.1|[fasta] (AL049524) putative retrotransposon [Arabidopsis thaliana]
Length 1230 aa
position (link: detail on the area) subject position direction score
83864..83986 (306..346) + 322
84059..84253 (352..416) + 60
84269..84373 (421..455) + 64
84488..85081 (492..689) + 331
85526..85627 (762..795) + 102
85637..86005 (800..922) + 305
86174..86338 (982..1036) + 106
86354..86422 (1049..1071) + 91
86516..86722 (1077..1145) + 121
86741..86947 (1151..1219) + 147

gi|3269282|emb|CAA19715|[fasta] (AL030978) putative protein [Arabidopsis thaliana]
Length 1318 aa
position (link: detail on the area) subject position direction score
84458..84904 (327..475) + 158
84914..85135 (480..553) + 108
85457..86971 (713..1217) + 908

gi|3600044[fasta] T12H20.12 protease homolog from Arabidopsis thaliana BAC gb|AF080119 and is a member of the reverse transcriptase family PF|00078.
Length 1415 aa
position (link: detail on the area) subject position direction score
83330..83593 (156..243) + 950
84122..84349 (408..483) + 113
84431..84910 (507..666) + 294
84458..85141 (512..739) + 415
84908..85141 (667..744) + 126
85445..86278 (855..1132) + 495
85457..86278 (796..1069) + 515
86258..86971 (1061..1298) + 354
86258..86971 (1124..1361) + 404

gi|4539447|emb|CAB40035.1|[fasta] (AL049523) retrotransposon like protein [Arabidopsis thaliana]
Length 1515 aa
position (link: detail on the area) subject position direction score
84122..84349 (405..480) + 897
84431..84910 (504..663) + 294
84908..85141 (664..741) + 126
85457..86278 (919..1192) + 515
86258..86971 (1184..1421) + 354

gi|3513747[fasta] (AF080118) contains similarity to reverse transcriptases (Pfam; rvt.hmm, score: 11.19) [Arabidopsis thaliana]
Length 1633 aa
position (link: detail on the area) subject position direction score
83876..84016 (395..441) + 274
84446..84697 (552..635) + 127
84695..84976 (632..725) + 159
84974..85141 (723..778) + 97
85448..85852 (935..1069) + 343
85877..86005 (1082..1124) + 77
86126..86470 (1165..1279) + 216
86531..86929 (1284..1416) + 247

gi|2194136[fasta] (AC002062) Strong similarity to Zea mays retrotransposon Hopscotch polyprotein (gb|U12626). [Arabidopsis thaliana]
Length 1315 aa
position (link: detail on the area) subject position direction score
84461..84697 (464..542) + 509
84695..85138 (539..686) + 280
85454..85852 (799..931) + 337
85877..85969 (944..974) + 75
86126..86971 (1027..1308) + 457

gi|3924609[fasta] (AF069442) putative polyprotein of LTR transposon [Arabidopsis thaliana]
Length 1456 aa
position (link: detail on the area) subject position direction score
84518..84685 (522..577) + 126
84719..85135 (587..725) + 233
85442..85567 (933..974) + 76
85583..86971 (981..1443) + 851

gi|2245044|emb|CAB10462|[fasta] (Z97342) similarity to reverse transcriptase - Arabidopsis thaliana retrotransposon 2 (fragment) [Arabidopsis thaliana]
Length 2088 aa
position (link: detail on the area) subject position direction score
84005..84100 (1057..1088) + 164
84578..84688 (1232..1268) + 79
84704..85135 (1272..1415) + 245
85457..85558 (1616..1649) + 72
85583..85999 (1657..1795) + 349
86138..86479 (1823..1936) + 213
86516..86980 (1931..2085) + 274

gi|391657|dbj|BAA01703|[fasta] (D10880) ORF [Drosophila simulans]
Length 1409 aa
position (link: detail on the area) subject position direction score
84359..84430 (447..470) + 147
84458..84916 (481..633) + 314
84911..84985 (634..658) + 73
85070..85135 (684..705) + 60
85496..85849 (906..1023) + 270
85856..85999 (1024..1071) + 100
86123..86278 (1115..1166) + 111
86354..86500 (1192..1240) + 105
86606..86971 (1279..1400) + 253

gi|479178|pir||S32437[fasta] pol polyprotein - Volvox carteri f. nagariensis retrotransposon Osser
gi|288597|emb|CAA49283| (X69552) gag,protease,endonuclease, reverse transcriptase,RNaseH [Volvox carteri]
Length 1462 aa
position (link: detail on the area) subject position direction score
84281..84355 (502..526) + 483
84365..84433 (535..557) + 66
84458..84886 (565..707) + 268
84914..85108 (716..780) + 132
85475..85756 (962..1055) + 217
85754..85861 (1054..1089) + 118
85883..86005 (1096..1136) + 108
86156..86356 (1189..1255) + 74
86363..86974 (1259..1462) + 226

gi|531389[fasta] (U12626) copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length 1439 aa
position (link: detail on the area) subject position direction score
83882..83926 (323..337) + 121
84518..84682 (534..588) + 117
84689..85135 (589..737) + 243
85457..86287 (924..1200) + 513
86321..86956 (1214..1425) + 358

gi|3935164[fasta] (AC004557) F17L21.7 [Arabidopsis thaliana]
Length 1558 aa
position (link: detail on the area) subject position direction score
84518..84688 (660..716) + 192
84719..85141 (725..865) + 212
85460..85999 (1049..1228) + 376
86060..86980 (1249..1555) + 509

gi|2865424[fasta] (AF039371) polyprotein [Arabidopsis thaliana]
Length 1451 aa
position (link: detail on the area) subject position direction score
83882..83926 (333..347) + 354
84518..84688 (545..601) + 114
84698..85135 (603..748) + 224
85496..86971 (954..1445) + 897

gi|224534|prf||1107279B[fasta] ORF g [Drosophila sp.]
Length 1410 aa
position (link: detail on the area) subject position direction score
84359..86971 (448..1401) + 253
84359..86971 (448..1401) + 253
84458..84916 (482..634) + 314
84911..84985 (635..659) + 73
85070..85135 (685..706) + 60
85496..85849 (907..1024) + 265
85856..85999 (1025..1072) + 100
86123..86278 (1116..1167) + 103
86354..86500 (1193..1241) + 102

gi|74599|pir||OFFFCP[fasta] retrovirus-related polyprotein - fruit fly (Drosophila melanogaster) transposon copia
gi|950318 (M11240) unknown protein [Drosophila melanogaster]
gi|1491679|emb|CAA26444| (X02599) 31 KD polyprotein [Drosophila melanogaster]
Length 1409 aa
position (link: detail on the area) subject position direction score
84359..84430 (447..470) + 146
84458..84916 (481..633) + 314
84911..84985 (634..658) + 73
85070..85135 (684..705) + 60
85496..85849 (906..1023) + 265
85856..85999 (1024..1071) + 100
86123..86278 (1115..1166) + 103
86354..86500 (1192..1240) + 102
86606..86971 (1279..1400) + 253

gi|1169016|sp|P04146|COPI_DROME[fasta] COPIA PROTEIN
gi|7744|emb|CAA28054| (X04456) ORF [Drosophila melanogaster]
Length 1409 aa
position (link: detail on the area) subject position direction score
84359..86971 (447..1400) + 253
84359..86971 (447..1400) + 253
84458..84916 (481..633) + 314
84911..84985 (634..658) + 73
85070..85135 (684..705) + 60
85496..85849 (906..1023) + 265
85856..85999 (1024..1071) + 100
86123..86278 (1115..1166) + 103
86354..86500 (1192..1240) + 102

gi|950319[fasta] (M11240) unknown protein [Drosophila melanogaster]
Length 1017 aa
position (link: detail on the area) subject position direction score
84359..84430 (55..78) + 88
84458..84916 (89..241) + 314
84911..84985 (242..266) + 73
85070..85135 (292..313) + 60
85496..85849 (514..631) + 265
85856..85999 (632..679) + 100
86123..86278 (723..774) + 103
86354..86500 (800..848) + 102
86606..86971 (887..1008) + 253

gi|2865431[fasta] (AF039373) polyprotein [Arabidopsis thaliana]
Length 1451 aa
position (link: detail on the area) subject position direction score
84518..84688 (545..601) + 113
84698..85135 (603..748) + 224
85496..86971 (954..1445) + 892

gi|2865427[fasta] (AF039372) polyprotein [Arabidopsis thaliana]
Length 1451 aa
position (link: detail on the area) subject position direction score
84518..84688 (545..601) + 892
84698..85135 (603..748) + 224
85496..86971 (954..1445) + 888

gi|4239843|dbj|BAA74713.1|[fasta] (AB014676) copia-like retrotransposable element [Bombyx mori]
Length 1316 aa
position (link: detail on the area) subject position direction score
82979..83080 (11..44) + 146
84362..84886 (460..634) + 335
85070..85135 (690..711) + 81
85445..85618 (824..881) + 120
85694..85858 (899..953) + 122
85865..85999 (954..998) + 104
86126..86500 (1033..1157) + 186
86510..86926 (1162..1300) + 238

gi|4234854[fasta] (AF082134) pol polyprotein [Zea mays]
Length 998 aa
position (link: detail on the area) subject position direction score
84446..84682 (91..169) + 253
84695..84904 (183..252) + 163
84905..85099 (252..316) + 97
85493..86005 (491..661) + 415
86189..86338 (725..774) + 58
86363..86716 (790..907) + 241
86723..86977 (912..996) + 88

gi|4234852[fasta] (AF082133) gag-pol polyprotein [Zea mays]
Length 1406 aa
position (link: detail on the area) subject position direction score
83507..83758 (197..280) + 119
84446..84682 (499..577) + 183
84695..84904 (591..660) + 163
84905..85099 (660..724) + 95
85493..86005 (899..1069) + 408
86168..86338 (1126..1182) + 62
86363..86716 (1198..1315) + 241
86723..86977 (1320..1404) + 88

gi|2443320|dbj|BAA22288|[fasta] (D85597) polyprotein [Oryza australiensis]
Length 1317 aa
position (link: detail on the area) subject position direction score
84443..84904 (491..644) + 184
84905..84991 (644..672) + 69
85493..86170 (809..1034) + 443
86183..86320 (1041..1086) + 65
86354..86725 (1105..1228) + 284
86723..86974 (1230..1313) + 117

gi|2213582[fasta] (AC000348) T7N9.2 [Arabidopsis thaliana]
Length 1406 aa
position (link: detail on the area) subject position direction score
84461..84703 (586..666) + 146
84692..85138 (660..808) + 252
85460..85852 (923..1053) + 322
86126..86971 (1117..1398) + 468

gi|3779026[fasta] (AC005171) putative retrotransposon [Arabidopsis thaliana]
Length 1413 aa
position (link: detail on the area) subject position direction score
83888..83980 (386..416) + 247
84443..84685 (562..642) + 135
84719..85213 (652..816) + 259
85391..85852 (959..1112) + 348
85871..85999 (1118..1160) + 97
86396..86980 (1215..1409) + 322

gi|2245104|emb|CAB10526|[fasta] (Z97343) LTR retrotransposon [Arabidopsis thaliana]
Length 1433 aa
position (link: detail on the area) subject position direction score
83882..84016 (432..476) + 154
84560..84679 (634..673) + 59
84713..85138 (682..823) + 266
85460..85852 (917..1047) + 364
85877..86005 (1060..1102) + 84
86126..86971 (1143..1424) + 442

gi|3779021[fasta] (AC005171) putative reverse transcriptase [Arabidopsis thaliana]
Length 1402 aa
position (link: detail on the area) subject position direction score
84365..84424 (492..511) + 117
84458..84910 (522..672) + 280
84914..85135 (675..748) + 127
85457..86842 (924..1385) + 742

gi|99719|pir||S23319[fasta] hypothetical protein 2 - Arabidopsis thaliana retrotransposon Ta1-2 (strain Landsberg) (fragment)
gi|16384|emb|CAA37924| (X53976) orf 2 [Arabidopsis thaliana]
Length 1084 aa
position (link: detail on the area) subject position direction score
83453..83593 (102..148) + 71
83864..84121 (212..297) + 127
84245..84346 (338..371) + 79
84515..85012 (426..591) + 331
85013..85150 (589..634) + 74
85406..85627 (731..804) + 117
85637..86008 (809..932) + 323
86354..86446 (1054..1084) + 75

gi|2244959|emb|CAB10380|[fasta] (Z97340) similar to B.vulgaris CMS-associated mitochondrial ... (reverse transcriptase) [Arabidopsis thaliana]
Length 1942 aa
position (link: detail on the area) subject position direction score
84461..84691 (444..520) + 120
84461..84691 (1344..1420) + 142
84911..85135 (1449..1523) + 146
84911..85135 (549..623) + 146
85457..85999 (807..987) + 410
85457..86161 (1707..1941) + 436

gi|2865437[fasta] (AF039376) polyprotein [Arabidopsis arenosa]
Length 1390 aa
position (link: detail on the area) subject position direction score
84518..84688 (545..601) + 134
84698..85135 (603..748) + 220
85496..86818 (950..1390) + 792

gi|2244802|emb|CAB10225.1|[fasta] (Z97336) retrovirus-related polyprotein homolog [Arabidopsis thaliana]
Length 1489 aa
position (link: detail on the area) subject position direction score
83876..83944 (480..502) + 253
84446..84679 (629..706) + 112
84719..85135 (717..855) + 260
85457..85852 (1022..1153) + 326
85877..85930 (1166..1183) + 58
86243..86929 (1235..1463) + 372

gi|1916937[fasta] (U90320) reverse transcriptase, gag, polyprotein [Volvox carteri f. nagariensis]
Length 1350 aa
position (link: detail on the area) subject position direction score
84014..84160 (327..375) + 107
84281..84358 (447..472) + 65
84518..84883 (530..651) + 201
84914..85051 (661..706) + 92
85496..85861 (859..980) + 344
85883..86005 (987..1027) + 90
86177..86311 (1085..1129) + 59
86426..86494 (1172..1194) + 59
86552..86725 (1211..1268) + 150
86726..86974 (1268..1350) + 155

gi|4325355|gb|AAD17352|[fasta] (AF128395) contains similarity to retrovirus-related polyproteins [Arabidopsis thaliana]
Length 1366 aa
position (link: detail on the area) subject position direction score
84653..85135 (584..744) + 432
85442..85852 (883..1019) + 329
85877..86005 (1032..1074) + 88
86126..86536 (1115..1251) + 248
86747..86980 (1285..1362) + 107

gi|4309765|gb|AAD15534|[fasta] (AC006217) putative retrotransposon polyprotein [Arabidopsis thaliana]
Length 1664 aa
position (link: detail on the area) subject position direction score
84335..84436 (454..487) + 226
84515..85183 (512..734) + 399
85460..85999 (892..1071) + 423
86126..86308 (1114..1174) + 91
86762..86923 (1202..1255) + 106

gi|3377856[fasta] (AF076274) contains similarity to reverse trancriptase (Pfam: rvt.hmm, score: 19.54) and CCHC-type zinc fingers (Pfam: zf-CCHC.hmm, score: 12.35) [Arabidopsis thaliana]
Length 1104 aa
position (link: detail on the area) subject position direction score
83966..84103 (261..306) + 113
84488..84811 (412..519) + 259
85013..85150 (558..603) + 75
85466..85627 (680..733) + 113
85637..85852 (738..809) + 206
85913..86005 (810..840) + 68
86174..86302 (884..926) + 73
86405..86728 (946..1053) + 186

gi|4539373|emb|CAB40067.1|[fasta] (AL049525) putative retrotransposon polyprotein [Arabidopsis thaliana]
Length 1203 aa
position (link: detail on the area) subject position direction score
83876..84016 (97..143) + 238
84515..84697 (250..310) + 95
84695..84778 (307..334) + 60
85061..85141 (338..364) + 63
85448..85852 (521..655) + 343
85877..86005 (668..710) + 77
86126..86929 (751..1018) + 483

gi|3695393[fasta] (AF096371) contains similarity to retroviral aspartyl proteases (Pfam: rvp.hmm, score: 11.80) [Arabidopsis thaliana]
Length 1244 aa
position (link: detail on the area) subject position direction score
83882..84016 (418..462) + 91
84518..84697 (606..665) + 110
84692..84880 (661..723) + 86
85580..85852 (788..878) + 240
86126..86929 (956..1223) + 479

gi|4377464|emb|CAA26447|[fasta] (X02600) unidentified open reading frame I (1289 aa) [Drosophila melanogaster]
Length 1288 aa
position (link: detail on the area) subject position direction score
84359..84430 (447..470) + 493
84458..84916 (481..633) + 314
84911..84985 (634..658) + 73
85070..85135 (684..705) + 60
85496..85849 (906..1023) + 265
85856..85999 (1024..1071) + 100
86123..86278 (1115..1166) + 103
86354..86500 (1192..1240) + 102

gi|2865202[fasta] (U19263) ORF [Saccharomyces paradoxus]
Length 1626 aa
position (link: detail on the area) subject position direction score
84449..84631 (535..595) + 538
84638..84922 (602..696) + 192
85040..85135 (740..771) + 60
85484..85612 (1128..1170) + 101
85640..86005 (1175..1296) + 283
86366..86956 (1419..1615) + 299

gi|3269281|emb|CAA19714|[fasta] (AL030978) putative protein [Arabidopsis thaliana]
Length 819 aa
position (link: detail on the area) subject position direction score
85013..85135 (29..69) + 155
85457..85843 (229..357) + 315
85865..85999 (360..404) + 104
86147..86971 (444..718) + 467

gi|4063762[fasta] (AC005561) putative retrotransposon [Arabidopsis thaliana]
Length 1102 aa
position (link: detail on the area) subject position direction score
84719..84835 (392..430) + 123
84902..85051 (436..485) + 94
85487..85822 (628..739) + 336
85892..86899 (740..1075) + 521

gi|1769897|emb|CAA69271|[fasta] (Y08010) lectin receptor kinase [Arabidopsis thaliana]
Length 544 aa
position (link: detail on the area) subject position direction score
82946..83071 (16..57) + 143
83075..83398 (77..184) + 164
83399..83515 (184..222) + 80
83669..83728 (291..310) + 77
83786..84448 (319..539) + 437

gi|3650035[fasta] (AC005396) putative reverse transcriptase [Arabidopsis thaliana]
Length 1149 aa
position (link: detail on the area) subject position direction score
84365..84424 (474..493) + 355
84431..84916 (495..656) + 260
84914..85135 (657..730) + 138
85604..85999 (902..1033) + 342
86060..86302 (1054..1134) + 113

gi|99755|pir||S23312[fasta] RNA-directed DNA polymerase (EC 2.7.7.49) - Arabidopsis thaliana retrotransposon Ta1-1 (fragment)
gi|16356|emb|CAA37917| (X53973) reverse transcriptase [Arabidopsis thaliana]
Length 587 aa
position (link: detail on the area) subject position direction score
85406..85627 (55..128) + 186
85637..86008 (133..256) + 322
86354..86725 (379..502) + 271
86744..86965 (508..581) + 129

gi|4263654|gb|AAD15376|[fasta] (AC006136) putative reverse transcriptase [Arabidopsis thaliana]
Length 962 aa
position (link: detail on the area) subject position direction score
84167..84910 (715..962) + 238

gi|2462935|emb|CAA72989|[fasta] (Y12321) open reading frame 1 [Brassica oleracea]
Length 1131 aa
position (link: detail on the area) subject position direction score
83873..84016 (388..435) + 200
84449..84679 (571..647) + 128
84719..85138 (658..797) + 261
85460..85852 (893..1023) + 346
85877..86008 (1035..1078) + 92

gi|4249381|gb|AAD14478|[fasta] (AC005966) Strong similarity to gb|AF039376 Evelknievel retrotransposon polyprotein from Arabidopsis arenosa. [Arabidopsis thaliana]
Length 1194 aa
position (link: detail on the area) subject position direction score
84518..84688 (500..556) + 138
84698..85135 (558..703) + 225
85460..86347 (899..1194) + 493

gi|4185312[fasta] (AF090446) copia protein [Zea mays]
Length 447 aa
position (link: detail on the area) subject position direction score
85514..85567 (3..20) + 91
85583..86005 (25..165) + 371
86123..86722 (205..404) + 339
86729..86851 (406..446) + 107

gi|345511|pir||PC1232[fasta] retrovirus-related copia polyprotein - fruit fly (Drosophila simulans) (fragments)
Length 787 aa
position (link: detail on the area) subject position direction score
85592..85849 (316..401) + 98
85856..85999 (402..449) + 100
86123..86278 (493..544) + 111
86354..86500 (570..618) + 105
86606..86971 (657..778) + 253

gi|553073[fasta] (M94481) reverse transcriptase [Zea mays]
Length 700 aa
position (link: detail on the area) subject position direction score
84665..85108 (1..148) + 107
85496..86377 (407..700) + 542

gi|283051|pir||S27768[fasta] RNA-directed DNA polymerase (EC 2.7.7.49) - maize transposon (fragment)
Length 699 aa
position (link: detail on the area) subject position direction score
84665..85108 (1..148) + 542
85496..86374 (407..699) + 538

gi|3021268|emb|CAA18463|[fasta] (AL022347) putative protein [Arabidopsis thaliana]
Length 1240 aa
position (link: detail on the area) subject position direction score
85343..85405 (27..47) + 75
85454..85852 (84..216) + 366
85886..86005 (232..271) + 64
86126..86851 (312..553) + 432

gi|4557067|gb|AAD22506.1|AC007045_6[fasta] (AC007045) putative pol polyprotein [Arabidopsis thaliana]
Length 616 aa
position (link: detail on the area) subject position direction score
83912..84019 (123..158) + 129
84281..84775 (244..408) + 397
84908..85168 (414..500) + 181
85751..85945 (545..609) + 200

gi|4539662|gb|AAD22155.1|AF061282_8[fasta] (AF061282) polyprotein [Sorghum bicolor]
Length 1012 aa
position (link: detail on the area) subject position direction score
83861..83926 (278..299) + 92
85442..85711 (588..677) + 233
86126..86287 (726..779) + 124
86312..86974 (790..1010) + 411

gi|4263653|gb|AAD15375|[fasta] (AC006136) hypothetical protein [Arabidopsis thaliana]
Length 358 aa
position (link: detail on the area) subject position direction score
83453..83578 (41..82) + 102
83660..83875 (110..181) + 259
83918..84241 (184..291) + 355

gi|2415368[fasta] (AF015276) protease/reverse transcriptase [Volvox carteri]
Length 1053 aa
position (link: detail on the area) subject position direction score
85478..85633 (548..599) + 101
85613..85861 (592..674) + 201
85862..86170 (674..776) + 136
86183..86311 (783..825) + 51
86387..86488 (860..893) + 66
86522..86725 (904..971) + 153
86747..86971 (978..1052) + 143

gi|4325360|gb|AAD17357|[fasta] (AF128395) contains similarity to retrovirus-related polyproteins [Arabidopsis thaliana]
Length 769 aa
position (link: detail on the area) subject position direction score
84518..84904 (192..320) + 92
84905..84991 (320..348) + 76
85013..85138 (354..395) + 58
85493..85585 (445..475) + 56
85796..85999 (477..544) + 164
86183..86323 (562..608) + 76
86567..86686 (631..670) + 62
86762..86974 (695..765) + 119

gi|421954|pir||S25786[fasta] hypothetical protein 3 - potato transposon Tst1
gi|21433|emb|CAA36615| (X52387) ORF3 [Solanum tuberosum]
Length 675 aa
position (link: detail on the area) subject position direction score
84383..84949 (134..322) + 436
85013..85141 (347..389) + 94
85454..85774 (569..675) + 261

gi|99730|pir||S23315[fasta] hypothetical protein 3 - Arabidopsis thaliana retrotransposon Ta1-2 (strain Kashmir) (fragment)
gi|1345512|emb|CAA37920| (X53975) orf 3 [Arabidopsis thaliana]
Length 494 aa
position (link: detail on the area) subject position direction score
85406..85627 (56..129) + 98
85637..86008 (134..257) + 327
86354..86698 (380..494) + 243

gi|4567266|gb|AAD23679.1|AC006841_7[fasta] (AC006841) putative pol polyprotein [Arabidopsis thaliana]
Length 838 aa
position (link: detail on the area) subject position direction score
83867..84124 (300..385) + 97
86168..86338 (562..618) + 77
86354..86725 (631..754) + 274
86762..86944 (766..826) + 134

gi|3377848[fasta] (AF076274) contains similarity to reverse transcriptases (Pfam: rvt.hmm, score: 12.22) [Arabidopsis thaliana]
Length 403 aa
position (link: detail on the area) subject position direction score
85559..85999 (10..156) + 36
86126..86308 (199..259) + 91
86606..86986 (276..402) + 194

gi|4544415|gb|AAD22324.1|AC006955_10[fasta] (AC006955) putative polyprotein [Arabidopsis thaliana]
Length 387 aa
position (link: detail on the area) subject position direction score
85877..85999 (18..58) + 243
86126..86980 (100..384) + 508

gi|421955|pir||S25787[fasta] hypothetical protein 4 - potato transposon Tst1
gi|21434|emb|CAA36616| (X52387) ORF4 [Solanum tuberosum]
Length 390 aa
position (link: detail on the area) subject position direction score
85787..85852 (1..22) + 104
85859..86005 (24..72) + 83
86060..86290 (92..168) + 127
86282..86824 (164..344) + 335

gi|4185311[fasta] (AF090446) polyprotein [Zea mays]
Length 476 aa
position (link: detail on the area) subject position direction score
83972..84016 (23..37) + 110
84050..84220 (45..101) + 36
84281..84379 (124..156) + 94
84383..85135 (159..409) + 435

gi|2827718|emb|CAA16691|[fasta] (AL021684) retrotransposon - like protein [Arabidopsis thaliana]
Length 1021 aa
position (link: detail on the area) subject position direction score
86138..86968 (27..303) + 120

[help]


Entrance