information on F19F18    (78757..79947)

Direction: +

Frame: 1

ORF

    78580..79947  (Met: 78652 78730 78829 78979 79120 79162 79225 79363 79390 79618 79825 79861)
SLHCSFTERIISILHQPISVSSSPMGKPGGAKTRTAVCLSDGVFFLAGAFMSLTLVWSYF
SIFSPSFTSLRHDGKPVQCSGLDMQFDPSEPGFYDDPDLSYSIEKPITKWDEKRNQWFES
HPSFKPGSENRIVMVTGSQSSPCKNPIGDHLLLRCFKNKVDYARIHGHDIFYSNSLLHPK
MNSYWAKLPVVKAAMLAHPEAEWIWWVDSDAIFTDMEFKPPLHRYRQHNLVVHGWPNIIY
EKQSWTALNAGVFLIRNCQWSMDLIDTWKSMGPVSPDYKKWGPIQRSIFKDKLFPESDDQ
TALIYLLYKHKELYYPKIYLEAEYYLQGYWIGVFGDFANVTERYLEMEREDDTLRRRHAE
KVSERYGAFREERFLKGEFGGRGSRRRAFITHFTGCQPCSGDHNPSYDGDTCWNEMIRAL
NFADNQVMRVYGYVHSDLSKTSPLQPLPFDYPNEAW

GenBank annotation

    78652..79950    F19F18.180

BLASTX cluster

    78643..79947    cluster 8    4 hits for protein gene

BLASTN cluster

    79137..79205    cluster 8    1 hits for EST
    79865..79798    cluster 9    1 hits for EST

GENSCAN

    77884..79947    gene model 20
    Suboptimal exon

        78652..79947    Sngl    Phase: 0    Score: 0.232

Grail

    78594..79006    exon    Phase: 2    Score: 72
    Shadow exon

        79779..79950    exon    Phase: 2    Score: 79

Exon-Intron boundary candidatates

Acceptor
78594 [0.012] (2) 78606 [0.002] (2) 78628 [0.94N/0.827] (0) 78638 [0.367] (1)
78786 [0.90N/0.250] (2) 79120 [0.001] (0) 79157 [0.004] (1) 79309 [0.002] (0)
79387 [0.002] (0) 79466 [0.006] (1) 79531 [0.004] (0) 79547 [0.008] (1)
79562 [0.002] (1) 79647 [0.021] (2) 79779 [0.001] (2) 79858 [0.059] (0)
Donor
78687 [1.00N/0.691] (0) 78703 [0.059] (1) 78853 [0.005] (1) 78929 [0.012] (2)
78981 [0.032] (0) 79006 [0.022] (1) 79193 [0.038] (2) 79398 [0.022] (0)
79436 [0.74N/0.005] (2) 79466 [0.032] (2) 79662 [0.105] (0) 79678 [0.173] (1)
79857 [0.019] (0) 79868 [0.014] (2) 79894 [0.85N/0.014] (1) 79946 [0.74N/0.374] (2)

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