information on F19F18    (55959..55870)

Direction: -

Frame: 1

ORF

    56730..54757  (Met: 56475 56433 56424 56064 56037 56001 55998 55980 55956 55827 55821 55671 55662 55659 55614 55557 55530 55266 55230 55062 54915)
VFVVGVSPSDYTVPEDVKAAGFEICADELGSIVESHDVKKLKFHGGVDGLAGKLKASPTD
GLSTEAAQLSQRQELFGINKFAESEMRGFWVFVWEALQDMTLMILGVCAFVSLIVGIATE
GWPKGSHDGLGIAASILLVVFVTATSDYRQSLQFRDLDKEKKKITVQVTRNGFRQKLSIY
DLLPGDIVHLAIGDQVPADGLFLSGFSVVIDESSLTGESEPVMVNAQNPFLMSGTKVQDG
SCKMMITTVGMRTQWGKLMATLTEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQ
GMFMRKLSTGTHWVWSGDEALELLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMND
KALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKSCICMNVQDVANKGSSLQSEIPES
AVKLLIQSIFNNTGGEVVVNKHGKTELLGTPTETAILELGLSLGGKFQEERKSYKVIKVE
PFNSTKKRMGVVIELPEGGRMRAHTKGASEIVLAACDKVVNSSGEVVPLDEESIKYLNVT
INEFANEALRTLCLAYMDIEGGFSPDDAIPASGFTCVGIVGIKDPVRPGVKESVELCRRA
GITVRMVTGDNINTAKAIARECGILTDDGIAIEGPVFREKNQEELLELIPKIQVLFVS

GenBank annotation

    57157..53574    F19F18.130

BLASTX cluster

    57157..53556    cluster 5    99 hits for protein gene

BLASTN cluster

    55029..54618    cluster 4    2 hits for EST
    55801..55519    cluster 5    1 hits for EST

GENSCAN

    57157..53577    gene model 14
    39245..40775    gene model 10
    Suboptimal exon

        56552..54772    Intr    Phase: 1    Score: 0.288
        56717..56577    Intr    Phase: 1    Score: 0.290

Grail

    56717..54754    exon    Phase: 1    Score: 85

Exon-Intron boundary candidatates

Acceptor
54817 [0.002] (2) 54830 [0.001] (1) 54839 [0.002] (1) 54905 [0.055] (1)
54998 [0.014] (1) 55049 [0.074] (1) 55337 [0.001] (1) 55430 [0.81N/0.539] (1)
55495 [0.001] (2) 55502 [0.003] (1) 55511 [0.003] (1) 55588 [0.006] (2)
55625 [0.030] (1) 55628 [0.002] (1) 55709 [0.004] (1) 55812 [0.001] (0)
55985 [0.490] (1) 56099 [0.046] (1) 56145 [0.029] (0) 56221 [0.001] (2)
56229 [0.064] (0) 56252 [0.001] (1) 56271 [0.056] (0) 56293 [0.005] (2)
56300 [0.733] (1) 56369 [0.004] (1) 56378 [0.137] (1) 56483 [0.009] (1)
56576 [0.479] (1) 56604 [0.001] (0) 56610 [0.008] (0) 56613 [0.001] (0)
56704 [0.002] (2) 56717 [1.00N/0.999] (1)
Donor
54772 [0.96N/0.917] (0) 54922 [0.005] (0) 54976 [0.108] (0) 55156 [0.022] (0)
55161 [0.013] (1) 55233 [0.072] (1) 55338 [0.976] (1) 55503 [0.005] (1)
55578 [0.101] (1) 55623 [0.009] (1) 55782 [0.006] (1) 55787 [0.014] (2)
55912 [0.639] (0) 56007 [0.134] (1) 56062 [0.007] (0) 56076 [0.018] (1)
56146 [0.069] (0) 56178 [0.007] (1) 56230 [0.012] (0) 56455 [0.018] (0)
56461 [0.007] (0) 56469 [0.006] (1) 56577 [0.852] (1)

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