information on F19F18
(55215..55030)
Direction: -
Frame: 1
ORF
56730..54757 (Met: 56475 56433 56424 56064 56037 56001 55998 55980 55956 55827 55821 55671 55662 55659 55614 55557 55530 55266 55230 55062 54915)
VFVVGVSPSDYTVPEDVKAAGFEICADELGSIVESHDVKKLKFHGGVDGLAGKLKASPTD
GLSTEAAQLSQRQELFGINKFAESEMRGFWVFVWEALQDMTLMILGVCAFVSLIVGIATE
GWPKGSHDGLGIAASILLVVFVTATSDYRQSLQFRDLDKEKKKITVQVTRNGFRQKLSIY
DLLPGDIVHLAIGDQVPADGLFLSGFSVVIDESSLTGESEPVMVNAQNPFLMSGTKVQDG
SCKMMITTVGMRTQWGKLMATLTEGGDDETPLQVKLNGVATIIGKIGLFFAVVTFAVLVQ
GMFMRKLSTGTHWVWSGDEALELLEYFAIAVTIVVVAVPEGLPLAVTLSLAFAMKKMMND
KALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKSCICMNVQDVANKGSSLQSEIPES
AVKLLIQSIFNNTGGEVVVNKHGKTELLGTPTETAILELGLSLGGKFQEERKSYKVIKVE
PFNSTKKRMGVVIELPEGGRMRAHTKGASEIVLAACDKVVNSSGEVVPLDEESIKYLNVT
INEFANEALRTLCLAYMDIEGGFSPDDAIPASGFTCVGIVGIKDPVRPGVKESVELCRRA
GITVRMVTGDNINTAKAIARECGILTDDGIAIEGPVFREKNQEELLELIPKIQVLFVS
GenBank annotation
57157..53574 F19F18.130
BLASTX cluster
57157..53556 cluster 5 99 hits for protein gene
BLASTN cluster
55029..54618 cluster 4 2 hits for EST
55801..55519 cluster 5 1 hits for EST
GENSCAN
57157..53577 gene model 14
39245..40775 gene model 10
Suboptimal exon
56552..54772 Intr Phase: 1 Score: 0.288
56717..56577 Intr Phase: 1 Score: 0.290
Grail
56717..54754 exon Phase: 1 Score: 85
Exon-Intron boundary candidatates
Acceptor |
54817 [0.002] (2) |
54830 [0.001] (1) |
54839 [0.002] (1) |
54905 [0.055] (1) |
54998 [0.014] (1) |
55049 [0.074] (1) |
55337 [0.001] (1) |
55430 [0.81N/0.539] (1) |
55495 [0.001] (2) |
55502 [0.003] (1) |
55511 [0.003] (1) |
55588 [0.006] (2) |
55625 [0.030] (1) |
55628 [0.002] (1) |
55709 [0.004] (1) |
55812 [0.001] (0) |
55985 [0.490] (1) |
56099 [0.046] (1) |
56145 [0.029] (0) |
56221 [0.001] (2) |
56229 [0.064] (0) |
56252 [0.001] (1) |
56271 [0.056] (0) |
56293 [0.005] (2) |
56300 [0.733] (1) |
56369 [0.004] (1) |
56378 [0.137] (1) |
56483 [0.009] (1) |
56576 [0.479] (1) |
56604 [0.001] (0) |
56610 [0.008] (0) |
56613 [0.001] (0) |
56704 [0.002] (2) |
56717 [1.00N/0.999] (1) |
Donor |
54772 [0.96N/0.917] (0) |
54922 [0.005] (0) |
54976 [0.108] (0) |
55156 [0.022] (0) |
55161 [0.013] (1) |
55233 [0.072] (1) |
55338 [0.976] (1) |
55503 [0.005] (1) |
55578 [0.101] (1) |
55623 [0.009] (1) |
55782 [0.006] (1) |
55787 [0.014] (2) |
55912 [0.639] (0) |
56007 [0.134] (1) |
56062 [0.007] (0) |
56076 [0.018] (1) |
56146 [0.069] (0) |
56178 [0.007] (1) |
56230 [0.012] (0) |
56455 [0.018] (0) |
56461 [0.007] (0) |
56469 [0.006] (1) |
56577 [0.852] (1) |
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