information on F19B15    (63059..63454)

Direction: +

Frame: 2

ORF

    62339..63469  (Met: 62468 62534 62609 62621 62702 62858 63038 63056 63119 63326)
TRITNPTSLKYFDEKHLRRNSKLRWYTTQLSITTRIHQSPQETMPLLLRRFPSPSVVSSF
FLRRSMASSTISSDIITPSNTKIGWIGTGVMGRSMCGHLIKAGYTVTVFNRTISKAQTLI
DMGANVADSPNSVAEQSDVVFTIVGYPSDVRHVLLDPKSGALSGLRQGGVLVDMTTSEPS
LAEEIAKAASFKNCFSIDAPVSGGDLGAKNGKLSIFAGGDETTVKRLDPLFSLMGKVNFM
GTSGKGQFAKLANQITIASTMLGLVEGLIYAHKAGLDVKKFLEAISTGAAGSKSIDLYGD
RILKRDFDPGFYVNHFVKDLGICLNECQRMGLALPGLALAQQLYLSLKAHGEGDLGTQAL
LLALERLNNVSVQSSDS

GenBank annotation

    62468..63472    F19B15.150

BLASTX cluster

    62582..63454    cluster 8    2 hits for protein gene

BLASTN cluster

    62567..62785    cluster 15    1 hits for EST

GENSCAN

    60473..63469    gene model 14
    Suboptimal exon

        62468..63469    Sngl    Phase: 0    Score: 0.516
        62534..63469    Sngl    Phase: 0    Score: 0.388

Grail

    62344..63266    exon    Phase: 2    Score: 87
    Shadow exon

        63323..63445    exon    Phase: 0    Score: 89

Exon-Intron boundary candidatates

Acceptor
62344 [0.442] (2) 62443 [0.001] (2) 62462 [0.053] (0) 62886 [0.052] (1)
62931 [0.022] (1) 62946 [0.56N/0.134] (1) 62958 [0.021] (1) 63138 [0.001] (1)
63159 [0.001] (1) 63225 [0.006] (1) 63241 [0.002] (2) 63294 [0.001] (1)
63300 [0.94N/0.122] (1) 63323 [0.65N/0.048] (0) 63351 [0.005] (1) 63365 [0.007] (0)
63383 [0.007] (0) 63396 [0.009] (1)
Donor
62412 [0.007] (2) 62622 [0.003] (2) 62645 [0.011] (1) 62843 [0.016] (1)
62993 [0.025] (1) 63007 [0.004] (0) 63074 [0.233] (1) 63137 [0.168] (1)
63266 [0.024] (1) 63395 [0.028] (1) 63404 [0.009] (1)

[help]


Entrance