information on F19B15    (46389..46841)

Direction: +

Frame: 3

ORF

    45063..46859  (Met: 45135 45156 45249 45351 45360 45384 45594 45699 46509 46566 46854)
NEFSCWQTNFLYPGGKEVLLKAVAMALPTYTMACFLLPKTVCKQIISVLADFWWRNKQEA
KGMHWKAWDHLSCYKAEGGIGFKDIEAFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKS
DPLNAPLGSRPSFVWKSIHASQEILRQGARAVVGNGEDIIIWRHKWLDSKPASAALRMQR
VPPQEYASVSSILKVSDLIDESGREWRKDVIEMLFPEVERKLIGELRPGGRRILDSYTWD
YTSSGDYTVKSGYWVLTQIINKRSSPQEVSEPSLNPIYQKIWKSQTSPKIQHFLWKCLSN
SLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIPIPLGGEWADSI
YVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREFNAQEVLRRAEDDLEE
WRIRTEAESCGTKPQVNRSSCGRWRPPPHQWVKCNTDATWNRDNERCGIGWVLRNEKGEV
KWMGARALPKLKSVLEAELEAMRWAVLSLSRFQYNYVIFESDSQVLIEILNNDEIWPSLK
PTIQDLQRLLSQFTEVKFVFIPREGNTLAERVARESLSFLNYDPKLYSIVPSWARSSMD

GenBank annotation

    45135..46862    F19B15.120

BLASTX cluster

    45048..50455    cluster 7    14 hits for protein gene

BLASTN cluster

    None

GENSCAN

    45594..46859    gene model 11
    16639..19279    gene model 5
    Suboptimal exon

        45135..45186    Init    Phase: 0    Score: 0.132
        45135..46859    Sngl    Phase: 0    Score: 0.181
        45445..46859    Term    Phase: 1    Score: 0.161

Grail

    45384..46046    exon    Phase: 0    Score: 85
    46471..46590    exon    Phase: 1    Score: 33
    46627..46862    exon    Phase: 1    Score: 60

Exon-Intron boundary candidatates

Acceptor
45106 [0.001] (1) 45211 [0.005] (1) 45313 [0.002] (1) 45319 [0.006] (1)
45334 [0.003] (1) 45376 [0.003] (1) 45393 [0.001] (0) 45407 [0.006] (2)
45473 [0.001] (2) 45500 [0.003] (2) 45504 [0.75N/0.367] (0) 45551 [0.001] (2)
45565 [0.002] (1) 45577 [0.003] (1) 45586 [0.001] (1) 45600 [0.004] (0)
45645 [0.076] (0) 45652 [0.020] (1) 45661 [0.237] (1) 45674 [0.006] (2)
45733 [0.012] (1) 46082 [0.217] (2) 46200 [0.015] (0) 46265 [0.003] (2)
46290 [0.001] (0) 46301 [0.001] (2) 46306 [0.155] (1) 46339 [0.011] (1)
46391 [0.001] (2) 46397 [0.001] (2) 46471 [0.006] (1) 46627 [0.78N/0.114] (1)
46635 [0.145] (0) 46645 [0.006] (1) 46704 [0.002] (0) 46726 [0.011] (1)
46838 [0.033] (2)
Donor
45182 [0.201] (0) 45186 [0.94N/0.468] (1) 45246 [0.578] (1) 45392 [0.618] (0)
45402 [0.007] (1) 45406 [1.00N/0.449] (2) 45626 [0.90N/0.044] (0) 45806 [0.005] (0)
45957 [0.012] (1) 46009 [0.007] (2) 46035 [0.097] (1) 46046 [0.90N/0.063] (0)
46459 [0.008] (2) 46705 [0.006] (2) 46727 [0.005] (0) 46851 [0.013] (1)

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