BLASTX alignment cluster 7    (45048..50455)

Local alignments in this cluster

gi|2583130[fasta] (AC002387) putative reverse transcriptase [Arabidopsis thaliana]
Length 1374 aa
position (link: detail on the area) subject position direction score
45078..46346 (779..1201) + 630
46374..46859 (1209..1370) + 543

gi|2708743[fasta] (AC003952) putative Tal-1-like reverse transcriptase [Arabidopsis thaliana]
Length 1365 aa
position (link: detail on the area) subject position direction score
45048..45563 (768..939) + 102
45639..45746 (958..993) + 71
45765..46106 (999..1112) + 253
46119..46325 (1116..1184) + 122
46389..46841 (1202..1352) + 158

gi|4335717|gb|AAD17395|[fasta] (AC006248) putative reverse transcriptase [Arabidopsis thaliana]
Length 1138 aa
position (link: detail on the area) subject position direction score
45048..45563 (545..716) + 93
45600..45746 (722..770) + 90
45765..46325 (776..962) + 352
46392..46739 (987..1102) + 189

gi|2618693[fasta] (AC002510) putative zinc-finger protein [Arabidopsis thaliana]
Length 1094 aa
position (link: detail on the area) subject position direction score
45048..45563 (498..669) + 99
45600..45758 (675..727) + 75
45765..46124 (729..848) + 252
46128..46325 (849..914) + 105
46392..46850 (932..1084) + 180

gi|3337363[fasta] (AC004481) putative zinc-finger protein [Arabidopsis thaliana]
Length 292 aa
position (link: detail on the area) subject position direction score
45984..46856 (1..291) + 237

gi|4432866|gb|AAD20714|[fasta] (AC006300) putative reverse transcriptase [Arabidopsis thaliana]
Length 1750 aa
position (link: detail on the area) subject position direction score
45072..45575 (1159..1326) + 186
45765..45833 (1383..1405) + 89
45900..46364 (1427..1581) + 217
46392..46808 (1592..1730) + 186
50455..50243 (1678..1748) - 121

gi|4522005|gb|AAD21778.1|[fasta] (AC007069) putative reverse transcriptase [Arabidopsis thaliana]
Length 1715 aa
position (link: detail on the area) subject position direction score
45078..45239 (1141..1194) + 94
45291..45587 (1194..1292) + 219
45639..45839 (1301..1367) + 127
45888..46091 (1383..1450) + 184
46218..46325 (1493..1528) + 96
46389..46784 (1555..1686) + 146

gi|2129709|pir||S65812[fasta] reverse transcriptase - Arabidopsis thaliana retrotransposon Ta11-1
gi|976278 (L47193) reverse transcriptase [Arabidopsis thaliana]
Length 1333 aa
position (link: detail on the area) subject position direction score
45048..45563 (771..942) + 180
45600..45746 (948..996) + 69
45765..46325 (1002..1188) + 377
46392..46580 (1213..1275) + 132

gi|4557078|gb|AAD22517.1|AC007045_17[fasta] (AC007045) putative Ta11-1 pol polyprotein, 5' partial [Arabidopsis thaliana]
Length 964 aa
position (link: detail on the area) subject position direction score
45078..45614 (445..623) + 121
45765..45839 (667..691) + 74
45897..46112 (709..780) + 177
46392..46784 (803..933) + 181

gi|4335720|gb|AAD17398|[fasta] (AC006248) putative reverse transcriptase Tal-1 [Arabidopsis thaliana]
Length 1225 aa
position (link: detail on the area) subject position direction score
45192..45587 (697..828) + 123
45639..45824 (839..900) + 127
45876..46328 (917..1067) + 258
46422..46481 (1095..1114) + 52
46509..46790 (1123..1216) + 91

gi|3513745[fasta] (AF080118) contains similarity to reverse trancriptase (Pfam: rvt.hmm, score: 42.57) [Arabidopsis thaliana]
Length 1662 aa
position (link: detail on the area) subject position direction score
45072..45533 (1159..1312) + 72
45666..45809 (1315..1362) + 59
45903..46325 (1362..1502) + 248
46389..46493 (1525..1559) + 71
46602..46781 (1573..1632) + 66
50455..50234 (1589..1662) - 110

gi|4263655|gb|AAD15377|[fasta] (AC006136) putative reverse transcriptase [Arabidopsis thaliana]
Length 1044 aa
position (link: detail on the area) subject position direction score
22177..22287 (486..522) + 93
45078..45590 (605..775) + 343
46206..46325 (843..882) + 87
46416..46820 (909..1043) + 164

gi|2213608[fasta] (AC000103) F21J9.2 [Arabidopsis thaliana]
Length 1048 aa
position (link: detail on the area) subject position direction score
45048..45593 (735..916) + 97
45600..45746 (912..960) + 36
45765..46004 (966..1045) + 158

gi|4538901|emb|CAB39638.1|[fasta] (AL049482) RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
Length 1274 aa
position (link: detail on the area) subject position direction score
45078..45371 (720..817) + 168
45465..45563 (843..875) + 76
45639..45728 (894..923) + 42
45765..45821 (935..953) + 56
45897..46061 (972..1026) + 135
46041..46106 (1019..1040) + 43
46200..46325 (1072..1113) + 93

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