information on F19B15    (24078..25275)

Direction: +

Frame: 3

ORF

    23838..25275  (Met: 23847 23976 24204 24303 24438 24571 25004 25070 24468 24488 24595 24804 24821 24844 24984 25091 25102 25149 25157)
YLYMGLSQRLKKKHFFFPKPENISTRVQERKKGTSNSEKLREERRIMGQGPSGGLNRQGD
RKPDGGDKKEKKFEPAAPPARVGRKQRKQKGPEAAARLPTVTPSTKCKLRLLKLERIKDY
LLMEEEFVANQERLKPQEEKAEEDRSKVDDLRGTPMSVGNLEELIDENHAIVSSSVGPEY
YVGILSFVDKDQLEPGCSILMHNKVCEIRV*ILFLL*TIVCCCGFRVADLFYVRFSLLLG
FYKMKWIQWCL*KVEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGV
ILYGEPGTGKTLLAKVCLCT*SNEY*FVCSIA*YYLTCQLHSVNRLFGQRPDLCCAAGHL
DFIRLNIARNLFSWIRIF*HLFLLMSSFLVSLCHKHEIVAIWWCYLMGISSLT*LF*GCE
FNISYFLESCW*S*QKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKR

GenBank annotation

    23976..25993    F19B15.70

BLASTX cluster

    23976..25822    cluster 3    91 hits for protein gene

BLASTN cluster

    23973..26138    cluster 6    6 hits for EST
    24541..24763    cluster 5    1 hits for EST

GENSCAN

    21922..25990    gene model 6
    Suboptimal exon

        23976..24449    Init    Phase: 0    Score: 0.531

Grail

    23847..24470    exon    Phase: 0    Score: 99
    24543..24806    exon    Phase: 0    Score: 90

Exon-Intron boundary candidatates

Acceptor
23895 [0.003] (0) 23899 [0.006] (1) 23909 [0.010] (2) 24085 [0.055] (1)
24210 [0.004] (0) 24214 [0.001] (1) 24249 [0.003] (0) 24409 [0.004] (1)
24414 [0.002] (0) 24464 [0.001] (2) 24519 [0.61N/0.261] (0) 24543 [0.95N/0.596] (0)
24571 [0.003] (1) 24577 [0.005] (1) 24643 [0.001] (1) 24652 [0.003] (1)
24657 [0.010] (0) 24663 [0.003] (0) 24715 [0.001] (1) 24837 [0.112] (0)
24842 [0.011] (2) 24877 [0.95N/0.115] (1) 24899 [0.045] (2) 24904 [0.002] (1)
25105 [0.96N/0.434] (1) 25127 [0.002] (2) 25152 [0.003] (0) 25165 [0.004] (1)
25209 [0.002] (0) 25247 [0.001] (2)
Donor
24137 [0.276] (0) 24156 [0.928] (1) 24166 [0.401] (2) 24278 [0.109] (0)
24294 [0.011] (1) 24449 [1.00N/0.968] (0) 24706 [0.009] (2) 24740 [0.004] (0)
24753 [0.005] (1) 24788 [1.00N/0.890] (0) 24921 [0.009] (1) 25191 [0.008] (1)
25264 [0.006] (2) 25274 [1.00N/0.890] (0)

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