BLASTX alignment cluster 3    (23976..25822)

Local alignments in this cluster

gi|1172635|sp|P46466|PRS4_ORYSA[fasta] 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (TAT-BINDING PROTEIN HOMOLOG 2)
gi|556558|dbj|BAA04615| (D17789) rice homologue of Tat binding protein [Oryza sativa]
Length 448 aa
position (link: detail on the area) subject position direction score
24033..24461 (25..167) + 154
24558..24788 (169..245) + 385
25057..25275 (230..302) + 274
25353..25628 (302..393) + 377
25661..25804 (375..422) + 231
25904..25990 (420..448) + 68

gi|1346810|sp|P48601|PRS4_DROME[fasta] 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4)
gi|1066065 (U39303) P26s4 [Drosophila melanogaster]
Length 439 aa
position (link: detail on the area) subject position direction score
24078..24452 (31..155) + 231
24558..24788 (160..236) + 332
25057..25275 (221..293) + 256
25353..25574 (293..366) + 341
25661..25804 (366..413) + 203
25904..25990 (411..439) + 55

gi|345717|pir||A44468[fasta] probable ATP-dependent proteinase (EC 3.4.21.-) chain 4 - human
Length 440 aa
position (link: detail on the area) subject position direction score
24078..24452 (32..156) + 256
24558..24788 (161..237) + 333
25057..25275 (222..294) + 255
25353..25574 (294..367) + 344
25661..25804 (367..414) + 193

gi|1172634|sp|Q03527|PRS4_HUMAN[fasta] 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4)
gi|403456 (L02426) 26S protease (S4) regulatory subunit [Homo sapiens]
gi|4506207|ref|NP_002793.1|pPSMC1| proteasome (prosome, macropain) 26S subunit, ATPase, 1
Length 440 aa
position (link: detail on the area) subject position direction score
24078..25275 (32..294) + 255
24078..25275 (32..294) + 255
24558..24788 (161..237) + 333
25353..25574 (294..367) + 344
25661..25804 (367..414) + 193

gi|1346811|sp|P49014|PRS4_MOUSE[fasta] 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4)
gi|1066067 (U39302) P26s4 [Mus musculus]
gi|1395182|dbj|BAA09341| (D50696) proteasomal ATPase (S4) [Rattus norvegicus]
Length 440 aa
position (link: detail on the area) subject position direction score
24078..25275 (32..294) + 255
24078..25275 (32..294) + 255
24558..24788 (161..237) + 333
25353..25574 (294..367) + 344
25661..25804 (367..414) + 193

gi|3122624|sp|O16368|PRS4_CAEEL[fasta] PROBABLE 26S PROTEASE REGULATORY SUBUNIT 4
gi|2315358 (AF016440) strong similarity to the AAA family of ATPases [Caenorhabditis elegans]
Length 443 aa
position (link: detail on the area) subject position direction score
23976..24449 (1..158) + 153
24558..24788 (164..240) + 333
25105..25275 (241..297) + 252
25353..25574 (297..370) + 348
25661..25804 (370..417) + 198

gi|2492516|sp|Q90732|PRS4_CHICK[fasta] 26S PROTEASE REGULATORY SUBUNIT 4 (P26S4)
gi|1399943 (U60187) 26S ATPase complex subunit 4 [Gallus gallus]
Length 440 aa
position (link: detail on the area) subject position direction score
24078..24452 (32..156) + 255
24558..24788 (161..237) + 330
25057..25275 (222..294) + 254
25353..25574 (294..367) + 344
25661..25804 (367..414) + 196
25904..25990 (412..440) + 55

gi|547935|sp|P36612|PRS4_SCHPO[fasta] 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (MTS2 PROTEIN)
gi|481780|pir||S39348 26S ATP/ubiquitin-dependent proteinase chain S4 - fission yeast (Schizosaccharomyces pombe)
gi|442508|emb|CAA82554| (Z29366) mts2 gene [Schizosaccharomyces pombe]
gi|738776|prf||2001429A ubiquitin-dependent protease [Schizosaccharomyces pombe]
Length 448 aa
position (link: detail on the area) subject position direction score
24087..24362 (42..133) + 158
24324..24461 (120..165) + 142
24558..24788 (167..243) + 344
25057..25275 (228..300) + 245
25353..25436 (300..327) + 128
25434..25574 (328..374) + 159
25661..25804 (374..421) + 180

gi|730904|sp|P40327|PRS4_YEAST[fasta] 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (TAT-BINDING HOMOLOG 5)
gi|626989|pir||S46613 YTA5 protein - yeast (Saccharomyces cerevisiae)
gi|531758|emb|CAA56957| (X81070) probable regulatory subunit of 26S proteasome; homologue to S4 subunit of human 26S proteasome [Saccharomyces cerevisiae]
gi|683690|emb|CAA88352| (Z48432) homolog to S4 subunit of human 26S proteasome (X81070) [Saccharomyces cerevisiae]
gi|1430967|emb|CAA98563| (Z74055) ORF YDL007w [Saccharomyces cerevisiae]
Length 437 aa
position (link: detail on the area) subject position direction score
24090..24461 (33..156) + 119
24558..24788 (158..234) + 347
25057..25275 (219..291) + 237
25353..25574 (291..364) + 298
25661..25804 (364..411) + 194

gi|557599[fasta] (L17040) ATPase [Saccharomyces cerevisiae]
Length 437 aa
position (link: detail on the area) subject position direction score
24090..25275 (33..291) + 237
24090..25275 (33..291) + 237
24558..24788 (158..234) + 347
25353..25574 (291..364) + 293
25661..25804 (364..411) + 194

gi|807211|bbs|160278[fasta] Tat-binding protein alpha, DdTBP alpha=Tat-binding protein 1 homolog/26S protease subunit homolog [Dictyostelium discoideum, Peptide, 439 aa]
Length 439 aa
position (link: detail on the area) subject position direction score
24090..24275 (32..93) + 245
24246..24461 (87..158) + 212
24558..24788 (160..236) + 348
25057..25275 (221..293) + 213
25353..25574 (293..366) + 317
25661..25804 (366..413) + 199
25904..25990 (411..439) + 59

gi|2492505|sp|Q58556|YB56_METJA[fasta] CELL DIVISION CYCLE PROTEIN 48 HOMOLOG MJ1156
gi|2118117|pir||C64444 cell division control protein CDC48 homolog - Methanococcus jannaschii
gi|1591785 (U67557) cell division control protein 48 (cdc48), AAA family [Methanococcus jannaschii]
Length 903 aa
position (link: detail on the area) subject position direction score
24573..24788 (433..504) + 294
24588..24788 (165..231) + 218
25105..25275 (232..288) + 137
25105..25275 (505..561) + 144
25389..25574 (297..358) + 148
25404..25598 (576..640) + 161
25661..25786 (358..399) + 95
25661..25789 (632..674) + 127

gi|1825624[fasta] (U88170) strong similarity to 26S protease regulatory subnit 4 (P26S4) [Caenorhabditis elegans]
Length 493 aa
position (link: detail on the area) subject position direction score
24102..24230 (83..125) + 655
24240..24338 (131..163) + 55
24558..24788 (214..290) + 280
25057..25275 (275..347) + 203
25353..25574 (347..420) + 297
25661..25810 (420..469) + 122

gi|1172636|sp|P46502|PRS6_CAEEL[fasta] PROBABLE 26S PROTEASE REGULATORY SUBUNIT 6B
gi|529215 (U12965) similar to CDC48/PAS1/SEC18 family; highest similarity to 26S protease subunit 4, member of eukaryotic ATPase family [Caenorhabditis elegans]
Length 414 aa
position (link: detail on the area) subject position direction score
24249..24443 (65..129) + 137
24561..24788 (138..213) + 237
25105..25275 (214..270) + 208
25353..25601 (270..352) + 267
25670..25810 (346..392) + 127

gi|1168858|sp|P46464|CDCH_HALSA[fasta] CDCH PROTEIN
gi|629399|pir||S47018 cdcH protein - Halobacterium salinarium
gi|517390|emb|CAA56097| (X79560) cdcH [Halobacterium salinarum]
Length 742 aa
position (link: detail on the area) subject position direction score
24573..24827 (443..527) + 45
24624..24788 (187..241) + 202
25105..25275 (515..571) + 133
25105..25275 (242..298) + 158
25368..25598 (574..650) + 147
25389..25574 (307..368) + 158
25661..25786 (368..409) + 87
25661..25789 (642..684) + 77

gi|3257095|dbj|BAA29778|[fasta] (AP000003) 840aa long hypothetical cell division control protein (transitional endoplasmic reticulum ATPase) [Pyrococcus horikoshii]
Length 840 aa
position (link: detail on the area) subject position direction score
24573..24788 (193..264) + 95
24576..24788 (529..599) + 189
25105..25275 (600..656) + 138
25105..25275 (265..321) + 145
25368..25601 (659..736) + 161
25389..25574 (330..391) + 154
25661..25786 (727..768) + 104

gi|2648442[fasta] (AE000959) cell division control protein 48, AAA family (cdc48-2) [Archaeoglobus fulgidus]
Length 811 aa
position (link: detail on the area) subject position direction score
24573..24788 (515..586) + 66
24624..24788 (195..249) + 205
25105..25275 (250..306) + 135
25105..25275 (587..643) + 140
25374..25574 (648..714) + 154
25389..25574 (315..376) + 166
25661..25789 (714..756) + 118

gi|1172638|sp|P46507|PRS6_MANSE[fasta] 26S PROTEASE REGULATORY SUBUNIT 6B (ATPASE MS73)
gi|559486|emb|CAA86294| (Z38135) DEAD-box ATPase [Manduca sexta]
Length 415 aa
position (link: detail on the area) subject position direction score
24270..24443 (73..130) + 137
24561..24785 (139..213) + 235
25105..25275 (215..271) + 205
25353..25577 (271..345) + 270
25667..25795 (346..388) + 136

gi|2492517|sp|Q63570|PRS6_RAT[fasta] 26S PROTEASE REGULATORY SUBUNIT 6B (TAT-BINDING PROTEIN-7) (TBP-7)
gi|1395186|dbj|BAA09340| (D50695) proteasomal ATPase (Tat-binding protein7) [Rattus norvegicus]
Length 418 aa
position (link: detail on the area) subject position direction score
24270..25795 (76..391) + 136
24270..25795 (76..391) + 136
24561..24788 (142..217) + 228
25105..25275 (218..274) + 202
25353..25604 (274..357) + 273

gi|1172637|sp|P43686|PRS6_HUMAN[fasta] 26S PROTEASE REGULATORY SUBUNIT 6B (TAT-BINDING PROTEIN-7) (TBP-7)
Length 418 aa
position (link: detail on the area) subject position direction score
24270..25795 (76..391) + 136
24270..25795 (76..391) + 136
24561..24788 (142..217) + 228
25105..25275 (218..274) + 202
25353..25604 (274..357) + 273

gi|263099|bbs|121996[fasta] Tat binding protein 7, TBP-7=transcriptional activator [human, Peptide, 458 aa]
Length 458 aa
position (link: detail on the area) subject position direction score
24270..24443 (76..133) + 116
24561..24788 (142..217) + 228
25105..25275 (218..274) + 202
25353..25604 (274..357) + 273
25667..25795 (349..391) + 136

gi|2791680[fasta] (AF038965) 26S proteasome ATPase subunit [Homo sapiens]
gi|4096275|gb|AAC99817.1| (U27515) MIP224 [Homo sapiens]
Length 418 aa
position (link: detail on the area) subject position direction score
24270..24443 (76..133) + 136
24561..24788 (142..217) + 228
25105..25275 (218..274) + 202
25353..25604 (274..357) + 273
25667..25795 (349..391) + 136

gi|3450955[fasta] (AF020736) ATPase homolog [Homo sapiens]
Length 418 aa
position (link: detail on the area) subject position direction score
24270..24443 (76..133) + 147
24561..24788 (142..217) + 221
25105..25275 (218..274) + 202
25353..25604 (274..357) + 273
25667..25795 (349..391) + 136

gi|3122632|sp|O28303|PRS1_ARCFU[fasta] PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG AF1976
gi|2648566 (AE000967) 26S protease regulatory subunit 4 [Archaeoglobus fulgidus]
Length 398 aa
position (link: detail on the area) subject position direction score
24195..24461 (27..115) + 136
24561..24788 (118..193) + 255
25105..25275 (194..250) + 196
25353..25598 (250..331) + 239
25661..25816 (323..374) + 147

gi|2622767[fasta] (AE000923) cell division control protein Cdc48 [Methanobacterium thermoautotrophicum]
Length 732 aa
position (link: detail on the area) subject position direction score
24573..24788 (458..529) + 44
24624..24788 (203..257) + 193
25057..25275 (514..586) + 140
25105..25275 (258..314) + 143
25389..25574 (597..658) + 153
25389..25574 (323..384) + 162
25661..25789 (658..700) + 106

gi|464860|sp|P34123|PRS6_DICDI[fasta] 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG (TAT-BINDING PROTEIN HOMOLOG 2)
gi|422298|pir||JN0611 probable transcription factor DdTBP2 - slime mold (Dictyostelium discoideum)
gi|290055 (L16578) HIV1 TAT-binding protein [Dictyostelium discoideum]
Length 403 aa
position (link: detail on the area) subject position direction score
24270..24440 (61..117) + 136
24564..24788 (128..202) + 232
25105..25275 (203..259) + 209
25353..25604 (259..342) + 276
25667..25795 (334..376) + 123

gi|1709797|sp|P54775|PRS6_MOUSE[fasta] 26S PROTEASE REGULATORY SUBUNIT 6B (CIP21)
gi|1196528 (L76223) ATPase [Mus musculus]
Length 418 aa
position (link: detail on the area) subject position direction score
24270..24443 (76..133) + 123
24561..24788 (142..217) + 222
25105..25275 (218..274) + 202
25353..25604 (274..357) + 273
25667..25789 (349..389) + 123

gi|1709798|sp|P54778|PRS6_SOLTU[fasta] 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG
gi|1155334 (U43398) POTATP1 [Solanum tuberosum]
Length 413 aa
position (link: detail on the area) subject position direction score
24228..24434 (57..125) + 91
24561..24788 (137..212) + 236
25105..25275 (213..269) + 195
25353..25574 (269..342) + 271
25667..25795 (344..386) + 110

gi|2492524|sp|Q58576|PRS1_METJA[fasta] PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MJ1176
gi|2127779|pir||G64446 ATP-dependent 26S proteosome regulatory subunit 4 homolog - Methanococcus jannaschii
gi|1591803 (U67559) proteasome regulatory AAA-ATPase [Methanococcus jannaschii]
Length 430 aa
position (link: detail on the area) subject position direction score
24270..24461 (81..144) + 158
24561..24827 (147..235) + 250
25105..25275 (223..279) + 187
25353..25574 (279..352) + 236
25661..25795 (352..396) + 133

gi|2649281[fasta] (AE001014) cell division control protein 48, AAA family (cdc48-1) [Archaeoglobus fulgidus]
Length 733 aa
position (link: detail on the area) subject position direction score
24576..24827 (437..520) + 118
24615..24788 (177..234) + 203
25105..25275 (235..291) + 139
25105..25275 (508..564) + 142
25371..25601 (568..644) + 163
25389..25574 (300..361) + 163
25661..25786 (361..402) + 113
25661..25789 (635..677) + 117

gi|3122631|sp|O26824|PRS1_METTH[fasta] PUTATIVE 26S PROTEASE REGULATORY SUBUNIT HOMOLOG MTH728
gi|2621817 (AE000852) ATP-dependent 26S protease regulatory subunit 4 [Methanobacterium thermoautotrophicum]
Length 410 aa
position (link: detail on the area) subject position direction score
24270..24461 (62..125) + 127
24561..24788 (128..203) + 260
25105..25275 (204..260) + 180
25353..25604 (260..343) + 219
25661..25804 (333..380) + 130

gi|3687465|emb|CAA21189|[fasta] (AL031798) 26s protease regulatory subunit 6b homolog [Schizosaccharomyces pombe]
Length 389 aa
position (link: detail on the area) subject position direction score
24228..24440 (31..101) + 181
24561..24788 (111..186) + 238
25105..25275 (187..243) + 211
25353..25565 (243..313) + 233
25667..25795 (319..361) + 107

gi|730715|sp|Q07590|SAV_SULAC[fasta] SAV PROTEIN
gi|1076162|pir||S43859 ATPase - Sulfolobus acidocaldarius
gi|310600 (L17042) ATPase [Sulfolobus acidocaldarius]
Length 780 aa
position (link: detail on the area) subject position direction score
24609..24788 (480..539) + 40
24615..24788 (207..264) + 190
25105..25275 (540..596) + 130
25105..25275 (265..321) + 137
25389..25574 (330..391) + 154
25389..25598 (606..675) + 133
25661..25786 (667..708) + 88

gi|3024439|sp|P78578|PRS6_ASPNG[fasta] 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG
gi|1777414 (U15601) 26S proteasome subunit [Aspergillus niger]
Length 423 aa
position (link: detail on the area) subject position direction score
24270..24443 (77..134) + 107
24561..24788 (143..218) + 225
25105..25275 (219..275) + 208
25353..25565 (275..345) + 237
25670..25804 (352..396) + 94

gi|464861|sp|P33298|PRS6_YEAST[fasta] 26S PROTEASE REGULATORY SUBUNIT 6B HOMOLOG (YNT1 PROTEIN) (TAT-BINDING HOMOLOG 2)
gi|313880|emb|CAA51972| (X73570) 26S proteasome subunit Rpt3 [Saccharomyces cerevisiae]
gi|458389 (U06229) Ynt1p [Saccharomyces cerevisiae]
Length 428 aa
position (link: detail on the area) subject position direction score
24189..24443 (56..140) + 203
24561..24788 (149..224) + 231
25105..25275 (225..281) + 197
25353..25565 (281..351) + 232
25670..25795 (358..399) + 90

gi|2133217|pir||S69678[fasta] YTA2 protein - yeast (Saccharomyces cerevisiae)
gi|927327 (U32274) Yta2p; CAI: 0.21 [Saccharomyces cerevisiae]
Length 428 aa
position (link: detail on the area) subject position direction score
24189..24443 (56..140) + 105
24561..24788 (149..224) + 231
25105..25275 (225..281) + 197
25353..25565 (281..351) + 231
25670..25795 (358..399) + 90

gi|4105619[fasta] (AF049099) SPAF [Mus musculus]
Length 892 aa
position (link: detail on the area) subject position direction score
24615..24788 (621..678) + 47
24624..24788 (350..404) + 168
25105..25275 (405..461) + 106
25105..25275 (679..735) + 142
25353..25571 (461..533) + 125
25368..25604 (739..817) + 170
25676..25789 (812..849) + 102
25730..25786 (558..576) + 68

gi|4574740|gb|AAD24194.1|AF134402_1[fasta] (AF134402) Tat-binding protein-1 [Drosophila melanogaster]
Length 431 aa
position (link: detail on the area) subject position direction score
24201..24335 (47..91) + 53
24345..24425 (115..141) + 55
24564..24794 (157..233) + 246
25057..25275 (216..288) + 171
25353..25496 (288..335) + 153
25455..25601 (321..369) + 102
25661..25786 (360..401) + 127

gi|2492521|sp|Q25544|PRS8_NAEFO[fasta] 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (TAT-BINDING PROTEIN HOMOLOG)
gi|1353667 (U41812) Tat-binding protein homolog [Naegleria fowleri]
Length 414 aa
position (link: detail on the area) subject position direction score
24561..24788 (133..208) + 125
25105..25275 (209..265) + 183
25371..25574 (272..339) + 239
25661..25804 (339..386) + 119

gi|2492523|sp|Q63569|PRSA_RAT[fasta] 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) (TBP-1) (SPERMATOGENIC CELL/SPERM-ASSOCIATED TAT-BINDING PROTEIN HOMOLOG SATA)
gi|1395184|dbj|BAA11939| (D83522) proteasomal ATPase (rat TBP1) [Rattus norvegicus]
Length 439 aa
position (link: detail on the area) subject position direction score
24345..24425 (122..148) + 131
24564..24794 (164..240) + 248
25105..25275 (239..295) + 176
25353..25574 (295..368) + 255
25661..25786 (368..409) + 125

gi|3510277|dbj|BAA32559|[fasta] (D49686) Tat binding protein-1 [Mus musculus]
Length 442 aa
position (link: detail on the area) subject position direction score
24345..24425 (125..151) + 125
24564..24794 (167..243) + 245
25105..25275 (242..298) + 176
25353..25574 (298..371) + 255
25661..25822 (371..424) + 127

gi|3122626|sp|O18413|PRS8_DROME[fasta] 26S PROTEASE REGULATORY SUBUNIT 8
gi|2245467 (U97538) DUG [Drosophila melanogaster]
Length 405 aa
position (link: detail on the area) subject position direction score
24561..25804 (125..377) + 120
24561..25804 (125..377) + 120
25105..25275 (201..257) + 177
25350..25574 (256..330) + 250

gi|1709799|sp|P54814|PRS8_MANSE[fasta] 26S PROTEASE REGULATORY SUBUNIT 8 (18-56 PROTEIN)
gi|1167963 (U43728) 18-56 protein [Manduca sexta]
Length 402 aa
position (link: detail on the area) subject position direction score
24561..24788 (122..197) + 115
25105..25275 (198..254) + 177
25350..25574 (253..327) + 250
25661..25804 (327..374) + 120

gi|1709801|sp|Q01939|PRS8_YEAST[fasta] 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (SUG1 PROTEIN) (CIM3 PROTEIN) (TAT-BINDING PROTEIN TBY1)
gi|2133183|pir||S64052 transcription factor SUG1 - yeast (Saccharomyces cerevisiae)
gi|172878 (L01626) Tat-binding protein [Saccharomyces cerevisiae]
gi|1322539|emb|CAA96750| (Z72570) ORF YGL048c [Saccharomyces cerevisiae]
Length 405 aa
position (link: detail on the area) subject position direction score
24561..25275 (125..257) + 172
24561..25275 (125..257) + 172
25353..25574 (257..330) + 248
25661..25804 (330..377) + 125

gi|1710984[fasta] (U77918) spermatogenic cell/sperm-associated Tat-binding protein homolog Sata [Rattus norvegicus]
Length 442 aa
position (link: detail on the area) subject position direction score
24345..24425 (125..151) + 127
24564..24794 (167..243) + 248
25105..25275 (242..298) + 176
25353..25574 (298..371) + 253
25661..25786 (371..412) + 125

gi|2815905[fasta] (AF043734) Pros45 proteosome subunit homolog [Drosophila melanogaster]
Length 405 aa
position (link: detail on the area) subject position direction score
24561..25804 (125..377) + 120
24561..25804 (125..377) + 120
25105..25275 (201..257) + 177
25350..25574 (256..330) + 250

gi|228885|prf||1813279A[fasta] SUG1 gene [Saccharomyces cerevisiae]
Length 400 aa
position (link: detail on the area) subject position direction score
24561..24788 (125..200) + 243
25057..25275 (185..257) + 172
25353..25574 (257..330) + 248
25661..25804 (330..377) + 125

gi|1195528|bbs|172814[fasta] 26S protease subunit S8=SUG1 homolog [human, erythrocytes, Peptide, 405 aa]
gi|4591|emb|CAA47023| (X66400) sug1 [Saccharomyces cerevisiae]
Length 405 aa
position (link: detail on the area) subject position direction score
24561..25275 (125..257) + 172
24561..25275 (125..257) + 172
25353..25574 (257..330) + 248
25661..25804 (330..377) + 125

gi|3979998|emb|CAB11558|[fasta] (Z98866) similar to ATPases associated with various cellular activities (AAA); cDNA EST yk411g8.5 comes from this gene; cDNA EST yk361e3.5 comes from this gene; cDNA EST EMBL:C13357 comes from this gene; cDNA EST EMBL:D74251 co...
Length 416 aa
position (link: detail on the area) subject position direction score
24561..24788 (136..211) + 120
25105..25275 (212..268) + 177
25350..25574 (267..341) + 262
25661..25804 (341..388) + 115

gi|3122633|sp|O42586|PRSB_XENLA[fasta] 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 10) (TBP-10)
gi|2648045|emb|CAA71486| (Y10460) TBP10 protein [Xenopus laevis]
Length 404 aa
position (link: detail on the area) subject position direction score
24345..24425 (87..113) + 120
24564..24794 (129..205) + 248
25105..25275 (204..260) + 171
25353..25574 (260..333) + 254
25661..25786 (333..374) + 125

gi|3024431|sp|O04019|PRSA_ARATH[fasta] 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN HOMOLOG 1) (TBP-1)
gi|2342675 (AC000106) Similar to probable Mg-dependent ATPase (pir|S56671). ESTs gb|T46782,gb|AA04798 come from this gene. [Arabidopsis thaliana]
Length 419 aa
position (link: detail on the area) subject position direction score
24201..24335 (33..77) + 119
24564..24794 (144..220) + 253
25105..25275 (219..275) + 176
25353..25574 (275..348) + 240
25661..25804 (348..395) + 131

gi|1346812|sp|P47210|PRS8_HUMAN[fasta] 26S PROTEASE REGULATORY SUBUNIT 8 (PROTEASOME SUBUNIT P45) (THYROID HORMONE RECEPTOR INTERACTING PROTEIN 1) (TRIP1)
gi|2136007|pir||I53510 proteasome subunit p45 - human
gi|976227|dbj|BAA07919| (D44467) 26S proteasome subunit p45 [Homo sapiens]
gi|1096205|prf||2111282A 26S proteasome [Homo sapiens]
Length 406 aa
position (link: detail on the area) subject position direction score
24561..25804 (126..378) + 120
24561..25804 (126..378) + 120
25105..25275 (202..258) + 177
25350..25574 (257..331) + 241

gi|1174613|sp|P46465|PRSA_ORYSA[fasta] 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN HOMOLOG 1) (TBP-1)
gi|556560|dbj|BAA04614| (D17788) rice homologue of Tat binding protein [Oryza sativa]
Length 429 aa
position (link: detail on the area) subject position direction score
24201..25804 (43..405) + 131
24201..25804 (43..405) + 131
24564..24794 (154..230) + 247
25105..25275 (229..285) + 179
25353..25574 (285..358) + 241

gi|1174612|sp|P17980|PRSA_HUMAN[fasta] 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 1) (TBP-1) (PROTEASOME SUBUNIT P50)
Length 439 aa
position (link: detail on the area) subject position direction score
24345..24425 (122..148) + 125
24564..24794 (164..240) + 248
25105..25275 (239..295) + 176
25353..25574 (295..368) + 255
25661..25783 (368..408) + 120

gi|464863|sp|P34124|PRS8_DICDI[fasta] 26S PROTEASE REGULATORY SUBUNIT 8 (TAT-BINDING PROTEIN HOMOLOG 10)
gi|422297|pir||JN0610 probable transcription factor DdTBP10 - slime mold (Dictyostelium discoideum) (fragment)
gi|290057 (L16579) HIV1 TAT-binding protein [Dictyostelium discoideum]
Length 389 aa
position (link: detail on the area) subject position direction score
24561..24788 (108..183) + 120
25105..25275 (184..240) + 181
25371..25574 (247..314) + 231
25661..25804 (314..361) + 123

gi|3024434|sp|O23894|PRSA_BRACM[fasta] 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN HOMOLOG 1) (TBP-1)
gi|2564337|dbj|BAA22951| (D88663) Tat binding protein 1 [Brassica rapa]
Length 424 aa
position (link: detail on the area) subject position direction score
24564..24794 (149..225) + 120
25105..25275 (224..280) + 176
25353..25574 (280..353) + 240
25661..25804 (353..400) + 129

gi|1729860|sp|P54776|PRSA_LYCES[fasta] 26S PROTEASE REGULATORY SUBUNIT 6A HOMOLOG (TAT-BINDING PROTEIN HOMOLOG 1) (TBP-1) (MG(2+)-DEPENDENT ATPASE 1) (LEMA-1)
gi|1362099|pir||S56672 probable 26S proteinase chain MA-1 - tomato
gi|732815|emb|CAA52445| (X74426) Mg-dependent ATPase 1 [Lycopersicon esculentum]
Length 423 aa
position (link: detail on the area) subject position direction score
24201..24341 (37..83) + 92
24564..24794 (148..224) + 249
25105..25275 (223..279) + 179
25353..25574 (279..352) + 241
25661..25804 (352..399) + 131

gi|107855|pir||A34832[fasta] Tat-binding protein-1 - human
gi|338700 (M34079) tat binding protein-1 (tbp-1) [Homo sapiens]
gi|4506211|ref|NP_002795.1|pPSMC3| proteasome (prosome, macropain) 26S subunit, ATPase, 3
Length 404 aa
position (link: detail on the area) subject position direction score
24345..24425 (87..113) + 131
24564..24794 (129..205) + 248
25105..25275 (204..260) + 176
25353..25574 (260..333) + 255
25661..25783 (333..373) + 120

gi|2564007|dbj|BAA22935|[fasta] (AB000493) proteasome p45/SUG [Rattus norvegicus]
Length 374 aa
position (link: detail on the area) subject position direction score
24561..24788 (94..169) + 123
25105..25275 (170..226) + 177
25350..25574 (225..299) + 241
25661..25804 (299..346) + 120

gi|3790757[fasta] (AF099922) similar to the AAA family of ATPases; most similar to 26S protease regulatory subunit 8 [Caenorhabditis elegans]
Length 443 aa
position (link: detail on the area) subject position direction score
24561..24788 (163..238) + 120
25105..25275 (239..295) + 177
25350..25574 (294..368) + 252
25661..25804 (368..415) + 112

gi|1262435|emb|CAA61864|[fasta] (X89719) put. 26S protease subunit [Sus scrofa]
Length 398 aa
position (link: detail on the area) subject position direction score
24561..25804 (118..370) + 120
24561..25804 (118..370) + 120
25105..25275 (194..250) + 177
25350..25574 (249..323) + 241

gi|1709800|sp|P52915|PRS8_MOUSE[fasta] 26S PROTEASE REGULATORY SUBUNIT 8 (MSUG1 PROTEIN) (TAT-BINDING PROTEIN HOMOLOG 10) (TBP10) (P45/SUG)
gi|2137798|pir||S61923 SUG1 protein - mouse
gi|1165125|emb|CAA90961.1| (Z54219) mSUG1 protein [Mus musculus]
gi|1262433|emb|CAA61863| (X89718) 26S protease subunit [Sus scrofa]
gi|1395177|dbj|BAA11938| (D83521) proteasomal ATPase (rat SUG1) [Rattus norvegicus]
gi|2564003|dbj|BAA22933| (AB000491) proteasome p45/SUG [Rattus norvegicus]
gi|3193258 (AF069053) proteasome subunit SUG1 [Bos taurus]
Length 406 aa
position (link: detail on the area) subject position direction score
24561..25804 (126..378) + 120
24561..25804 (126..378) + 120
25105..25275 (202..258) + 177
25350..25574 (257..331) + 241

gi|2960216|emb|CAA11285|[fasta] (AJ223384) 26S proteasome regulatory ATPase subunit 10b (S10b) [Manduca sexta]
Length 396 aa
position (link: detail on the area) subject position direction score
24180..24440 (21..107) + 84
24564..24788 (118..192) + 213
25105..25275 (193..249) + 155
25353..25574 (249..322) + 244
25661..25795 (322..366) + 97

gi|3122625|sp|O17071|PRSX_CAEEL[fasta] PROBABLE 26S PROTEASE REGULATORY SUBUNIT S10B
gi|2394434 (AF024493) strong similarity to the AAA family of ATPases [Caenorhabditis elegans]
Length 398 aa
position (link: detail on the area) subject position direction score
24204..24434 (31..107) + 260
24564..24788 (120..194) + 221
25105..25275 (195..251) + 150
25353..25583 (251..327) + 239
25661..25795 (324..368) + 106

gi|2661071[fasta] (AF035309) similar to 26S proteasome subunit p45 [Homo sapiens]
Length 280 aa
position (link: detail on the area) subject position direction score
24570..24788 (3..75) + 129
25105..25275 (76..132) + 177
25350..25574 (131..205) + 241
25661..25804 (205..252) + 120

gi|2136322|pir||S60343[fasta] Trip1 protein - human
gi|695370 (L38810) thyroid receptor interactor [Homo sapiens]
gi|1094810|prf||2106382A thyroid hormone receptor-interacting protein [Homo sapiens]
gi|4506213|ref|NP_002796.1|pPSMC5| proteasome (prosome, macropain) 26S subunit, ATPase, 5
Length 406 aa
position (link: detail on the area) subject position direction score
24561..24788 (126..201) + 110
25105..25275 (202..258) + 177
25350..25574 (257..331) + 234
25661..25804 (331..378) + 120

gi|1078797|pir||S51042[fasta] tat-binding protein homolog - Plasmodium falciparum
Length 435 aa
position (link: detail on the area) subject position direction score
24561..24788 (156..231) + 120
25105..25275 (232..288) + 182
25374..25574 (294..360) + 232
25661..25804 (360..407) + 113

gi|263098|bbs|121995[fasta] Tat binding protein 1, TBP-1=transcriptional activator [human, Peptide, 439 aa]
Length 439 aa
position (link: detail on the area) subject position direction score
24345..24425 (122..148) + 112
24564..24794 (164..240) + 248
25105..25275 (239..295) + 176
25353..25574 (295..368) + 255
25661..25783 (368..408) + 110

gi|1170767|sp|P41836|PRS8_SCHPO[fasta] 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG (LET1 PROTEIN)
gi|626074|pir||S45176 transcription factor SUG1 homolog - fission yeast (Schizosaccharomyces pombe)
gi|406051 (U02280) Let1 [Schizosaccharomyces pombe]
gi|4106689|emb|CAA22628| (AL035065) 26s protease regulatory subunit 8 homolog [Schizosaccharomyces pombe]
Length 403 aa
position (link: detail on the area) subject position direction score
24561..24788 (122..197) + 113
25105..25275 (198..254) + 175
25374..25574 (262..328) + 238
25661..25804 (328..375) + 112

gi|3041724|sp|P46470|PRS8_XENLA[fasta] 26S PROTEASE REGULATORY SUBUNIT 8 (SUG1 HOMOLOG) (XSUG1)
gi|1877414|emb|CAA57512| (X81986) XSUG1 [Xenopus laevis]
Length 461 aa
position (link: detail on the area) subject position direction score
24561..24788 (121..196) + 112
25105..25272 (197..252) + 174
25350..25574 (251..325) + 241
25661..25804 (325..372) + 120

gi|1709804|sp|P49719|PRSX_SPETR[fasta] 26S PROTEASE REGULATORY SUBUNIT S10B (P44) (CONSERVED ATPASE DOMAIN PROTEIN 44)
gi|1045497 (U36395) conserved ATPase domain protein 44 [Spermophilus tridecemlineatus]
gi|2213932 (AF006305) 26S proteasome regulatory subunit [Homo sapiens]
Length 389 aa
position (link: detail on the area) subject position direction score
24228..24440 (30..100) + 92
24564..24788 (111..185) + 227
25105..25275 (186..242) + 152
25353..25574 (242..315) + 214
25661..25786 (315..356) + 97

gi|2492522|sp|Q92524|PRSX_HUMAN[fasta] 26S PROTEASE REGULATORY SUBUNIT S10B (PROTEASOME SUBUNIT P42)
gi|1526426|dbj|BAA11338| (D78275) proteasome subunit p42 [Homo sapiens]
gi|4506215|ref|NP_002797.1|pPSMC6| proteasome (prosome, macropain) 26S subunit, ATPase, 6
Length 389 aa
position (link: detail on the area) subject position direction score
24228..25786 (30..356) + 97
24228..25786 (30..356) + 97
24564..24788 (111..185) + 227
25105..25275 (186..242) + 152
25353..25574 (242..315) + 209

gi|3914449|sp|O64982|PRS7_PRUPE[fasta] 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROTEASOME SUBUNIT 7)
gi|3172331 (AF041258) 26S proteasome subunit 7 [Prunus persica]
Length 425 aa
position (link: detail on the area) subject position direction score
24564..24788 (145..219) + 125
25105..25275 (220..276) + 175
25353..25574 (276..349) + 272
25661..25804 (349..396) + 101

gi|2492519|sp|Q41365|PRS7_SPIOL[fasta] 26S PROTEASE REGULATORY SUBUNIT 7 (26S PROTEASOME SUBUNIT 7)
gi|1395191|dbj|BAA13021| (D86121) 26S proteasome ATPase subunit [Spinacia oleracea]
Length 426 aa
position (link: detail on the area) subject position direction score
24564..24788 (146..220) + 130
25105..25275 (221..277) + 175
25353..25574 (277..350) + 269
25661..25804 (350..397) + 101

gi|3193161[fasta] (AF067618) contains similarity to the AAA family of ATPases (Pfam; AAA, score; 259.07); most similar to human probable 26S protease subunit TBP-1 (SW:P17980) [Caenorhabditis elegans]
Length 430 aa
position (link: detail on the area) subject position direction score
24345..24425 (113..139) + 120
24564..24788 (155..229) + 222
25105..25275 (230..286) + 175
25353..25574 (286..359) + 249
25661..25786 (359..400) + 125

gi|547930|sp|P35998|PRS7_HUMAN[fasta] 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
gi|107102|pir||S24353 MSS1 protein - human
gi|219931|dbj|BAA01868| (D11094) MSS1 protein [Homo sapiens]
gi|228886|prf||1813280A tat-mediated transactivation modulator [Homo sapiens]
gi|4506209|ref|NP_002794.1|pPSMC2| proteasome (prosome, macropain) 26S subunit, ATPase, 2
Length 433 aa
position (link: detail on the area) subject position direction score
24564..25795 (153..401) + 95
24564..25795 (153..401) + 95
25105..25275 (228..284) + 171
25353..25574 (284..357) + 272

gi|1172640|sp|P46472|PRS7_XENLA[fasta] 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
gi|1079305|pir||S53709 MSS1 protein homolog - African clawed frog
gi|695772|emb|CAA56438| (X80157) xMSS1 [Xenopus laevis]
gi|1095500|prf||2109230A MSS1-like protein [Xenopus laevis]
Length 433 aa
position (link: detail on the area) subject position direction score
24564..24788 (153..227) + 101
25105..25275 (228..284) + 171
25353..25574 (284..357) + 272
25661..25795 (357..401) + 95

gi|464859|sp|P33297|PRSA_YEAST[fasta] 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN HOMOLOG 1) (TBP-1)
gi|626983|pir||S46605 YTA1 protein - yeast (Saccharomyces cerevisiae)
gi|313878|emb|CAA51971| (X73569) yeast tat-binding analog [Saccharomyces cerevisiae]
gi|1050819|emb|CAA62114| (X90518) ORF O3258 [Saccharomyces cerevisiae]
gi|1164962|emb|CAA64037| (X94335) YOR3258w [Saccharomyces cerevisiae]
gi|1420311|emb|CAA99315| (Z75025) ORF YOR117w [Saccharomyces cerevisiae]
Length 434 aa
position (link: detail on the area) subject position direction score
24564..24857 (159..256) + 268
25105..25275 (234..290) + 168
25353..25574 (290..363) + 251
25661..25807 (363..411) + 123

gi|3024433|sp|O14126|PRSA_SCHPO[fasta] PROBABLE 26S PROTEASE REGULATORY SUBUNIT 6A
gi|2414640|emb|CAB16387| (Z99260) 26s protease regulatory subunit, yeast tbp1 homolog [Schizosaccharomyces pombe]
Length 438 aa
position (link: detail on the area) subject position direction score
24192..24335 (49..96) + 101
24564..24794 (163..239) + 217
25105..25275 (238..294) + 167
25353..25574 (294..367) + 247
25661..25804 (367..414) + 127

gi|2506090|sp|P53549|SUG2_YEAST[fasta] PROBABLE 26S PROTEASE SUBUNIT SUG2 (PROTEASOME CAP SUBUNIT)
gi|2133163|pir||S67156 SUG2 protein - yeast (Saccharomyces cerevisiae)
gi|1420585|emb|CAA99481| (Z75167) ORF YOR259c [Saccharomyces cerevisiae]
gi|1931623 (U93262) proteasome cap subunit [Saccharomyces cerevisiae]
Length 437 aa
position (link: detail on the area) subject position direction score
24183..24440 (63..148) + 187
24561..24803 (158..238) + 217
25105..25275 (234..290) + 126
25353..25574 (290..363) + 232
25661..25795 (363..407) + 92

gi|2492518|sp|Q63347|PRS7_RAT[fasta] 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
gi|1395179|dbj|BAA09339| (D50694) proteasomal ATPase (MSS1) [Rattus norvegicus]
Length 433 aa
position (link: detail on the area) subject position direction score
24564..24788 (153..227) + 93
25105..25275 (228..284) + 164
25353..25574 (284..357) + 272
25661..25795 (357..401) + 95

gi|2492520|sp|Q18787|PRS7_CAEEL[fasta] PROBABLE 26S PROTEASE REGULATORY SUBUNIT 7
gi|3875191|emb|CAB01414| (Z78012) Similarity to Human 26S protease regulatory subunit 7 (SW:PRS7_HUMAN); cDNA EST yk314h3.5 comes from this gene; cDNA EST yk339d4.3 comes from this gene; cDNA EST yk339d4.5 comes from this gene; cDNA EST yk505e8.3 comes...
Length 435 aa
position (link: detail on the area) subject position direction score
24564..24788 (155..229) + 95
25105..25275 (230..286) + 172
25353..25574 (286..359) + 262
25661..25795 (359..403) + 93

gi|2506089|sp|P46471|PRS7_MOUSE[fasta] 26S PROTEASE REGULATORY SUBUNIT 7 (MSS1 PROTEIN)
Length 433 aa
position (link: detail on the area) subject position direction score
24564..25795 (153..401) + 95
24564..25795 (153..401) + 95
25105..25275 (228..284) + 168
25353..25574 (284..357) + 272

gi|1147800[fasta] (U43720) Sug2p [Saccharomyces cerevisiae]
Length 437 aa
position (link: detail on the area) subject position direction score
24183..25795 (63..407) + 92
24183..25795 (63..407) + 92
24561..24803 (158..238) + 217
25105..25275 (234..290) + 126
25353..25574 (290..363) + 232

gi|1916752[fasta] (U78072) VCP-like ATPase [Thermoplasma acidophilum]
Length 745 aa
position (link: detail on the area) subject position direction score
24609..24827 (460..532) + 178
25105..25275 (520..576) + 139
25105..25275 (243..299) + 146
25389..25574 (586..647) + 127
25389..25574 (308..369) + 155
25661..25789 (647..689) + 94

gi|3122634|sp|O42587|PRSA_XENLA[fasta] 26S PROTEASE REGULATORY SUBUNIT 6A (TAT-BINDING PROTEIN 6) (TBP-6)
gi|2648047|emb|CAA71487| (Y10461) TBP6 protein [Xenopus laevis]
Length 405 aa
position (link: detail on the area) subject position direction score
24345..24425 (106..132) + 95
24564..24794 (148..224) + 248
25105..25275 (223..279) + 176
25353..25574 (279..352) + 254
25661..25786 (352..393) + 72

gi|464862|sp|P33299|PRS7_YEAST[fasta] 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG (CIM5 PROTEIN) (TAT-BINDING HOMOLOG 3)
gi|422126|pir||S34354 tat-binding protein homolog YTA3 - yeast (Saccharomyces cerevisiae)
gi|313882|emb|CAA51973| (X73571) 26S proteasome subunit Rpt1 [Saccharomyces cerevisiae]
gi|410510|emb|CAA80470| (Z22817) putative ATPase [Saccharomyces cerevisiae]
gi|486249|emb|CAA81986| (Z28145) ORF YKL145w [Saccharomyces cerevisiae]
gi|738777|prf||2001430A 26S protease [Saccharomyces cerevisiae]
Length 467 aa
position (link: detail on the area) subject position direction score
24564..24788 (187..261) + 265
25105..25275 (262..318) + 180
25353..25574 (318..391) + 264
25661..25795 (391..435) + 84

gi|543291|pir||S39349[fasta] MSS1 protein homolog - mouse
Length 433 aa
position (link: detail on the area) subject position direction score
24564..24788 (153..227) + 97
25105..25275 (228..284) + 168
25353..25574 (284..357) + 272
25661..25795 (357..401) + 95

gi|2853099|emb|CAA16915|[fasta] (AL021767) 26s protease regulatory subunit 7 [Schizosaccharomyces pombe]
Length 440 aa
position (link: detail on the area) subject position direction score
24564..24788 (159..233) + 106
25105..25275 (234..290) + 179
25353..25574 (290..363) + 248
25661..25795 (363..407) + 92

gi|1066063[fasta] (U39304) P26s4 [Cricetinae gen. sp.]
Length 143 aa
position (link: detail on the area) subject position direction score
24558..24746 (4..66) + 57
25057..25275 (64..136) + 255

gi|3135751|emb|CAA06853|[fasta] (AJ006095) 26S protease regulatory subunit 6 [Cicer arietinum]
Length 177 aa
position (link: detail on the area) subject position direction score
25177..25275 (1..33) + 107
25353..25574 (33..106) + 271
25667..25795 (108..150) + 115

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Entrance