information on F19B15    (28486..26480)

Direction: -

Frame: 3

ORF

    28546..26480  (Met: 28528 28513 28486 28342 28036 27781 27565 27538 27385 27340 27226 27046 26884 26824 26662)
PKKEKLMVRSFMRGKKNCKTMKFFVLVLLLVLQFFSNKALSQSEEGEFGFNGYLYDNSGI
AITNSKGLMKLTNSSEFSYGHVFYNSPVRFKNSPNGTVSSFSTTFVFAIVSNVNALDGHG
LAFVISPTKGLPYSSSSQYLGLFNLTNNGDPSNHIVAVEFDTFQNQEFDDMDNNHVGIDI
NSLSSEKASTAGYYEDDDGTFKNIRLINQKPIQAWIEYDSSRRQLNVTIHPIHLPKPKIP
LLSLTKDLSPYLFDSMYVGFTSATGRLRSSHYILGWTFKLNGTASNIDISRLPKLPRDSR
STSVKKILAISLSLTSLAILVFLTISYMLFLKRKKLMEVLEDWEVQFGPHRFAYKDLYIA
TKGFRNSELLGKGGFGKVYKGTLSTSNMDIAVKKVSHDSRQGMREFVAEIATIGRLRHPN
LVRLLGYCRRKGELYLVYDCMPKGSLDKFLYHQPEQSLDWSQRFKIIKDVASGLCYLHHQ
WVQVIIHRDIKPANVLLDDSMNGKLGDFGLAKLCEHGFDPQTSNVAGTFGYISPELSRTG
KASTSSDVFAFGILMLEITCGRRPVLPRASSPSEMVLTDWVLDCWEDDILQVVDERVKQD
DKYLEEQVALVLKLGLFCSHPVAAVRPSMSSVIQFLDGVAQLPNNLFDIVKARENVGAIE
GFGEAAESLAEPCSVATLTFTEPFVSHGR

GenBank annotation

    28486..26477    F19B15.80

BLASTX cluster

    28268..26536    cluster 4    115 hits for protein gene

BLASTN cluster

    27427..27094    cluster 7    1 hits for EST

GENSCAN

    28486..26480    gene model 7
    Suboptimal exon

        28513..26480    Sngl    Phase: 0    Score: 0.167

Grail

    28513..26477    exon    Phase: 0    Score: 98

Exon-Intron boundary candidatates

Acceptor
26502 [0.010] (1) 26550 [0.004] (1) 26565 [0.020] (1) 26588 [0.008] (2)
26592 [0.004] (1) 26676 [0.012] (1) 26707 [0.002] (0) 26749 [0.026] (0)
26858 [0.001] (2) 26877 [0.004] (1) 26928 [0.047] (1) 27010 [0.001] (0)
27083 [0.064] (2) 27216 [0.001] (1) 27260 [0.108] (2) 27321 [0.041] (1)
27347 [0.001] (2) 27405 [0.002] (1) 27446 [0.002] (2) 27452 [0.014] (2)
27494 [0.077] (2) 27508 [0.001] (0) 27522 [0.005] (1) 27548 [0.012] (2)
27599 [0.004] (2) 27614 [0.001] (2) 27684 [0.001] (1) 27753 [0.031] (1)
27759 [0.016] (1) 27972 [0.101] (1) 27975 [0.002] (1) 27990 [0.002] (1)
28001 [0.023] (2) 28074 [0.039] (1) 28125 [0.004] (1) 28218 [0.002] (1)
28284 [0.71N/0.004] (1) 28420 [0.002] (0) 28467 [0.004] (1)
Donor
26635 [0.015] (1) 26759 [0.009] (0) 26822 [0.135] (0) 26968 [0.480] (1)
26997 [0.016] (2) 27098 [0.004] (0) 27229 [0.009] (1) 27406 [0.88N/0.559] (1)
27416 [0.003] (0) 27426 [0.014] (2) 27436 [0.059] (1) 27495 [0.030] (2)
27780 [0.005] (2) 27952 [0.101] (1) 27973 [0.235] (1) 28261 [0.99N/0.031] (1)
28386 [0.003] (2) 28393 [0.011] (1) 28526 [0.052] (0)

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