information on F17N18    (6364..6570)

Direction: +

Frame: 1

ORF

    4474..6825  (Met: 4525 4660 4687 4741 4783 4801 4912 5056 5071 5101 5347 5380 5419 5710 5914 6004 6151 6436 6472 6475 6658)
KLSLYLSLLLALFLGISMDSEVEENVISVITDTTFLISTNLKVDPRVISLFSQLFYDWRS
VYMEIKSLYPKMEFHLLLRQILKFWTSTDMGRQWKFVSLICKIMFLVSSMDLDSESELTS
LIKKIISLFNSKPDTGSELVSLITQLMRIDTSVDSDSEPTQESELLSLISQLVSAKPEPE
LTSLTRRIISTFISMNWEPMQFISVCPQVMVELVHGKLTTEVVRPRKAKERECELYAYEI
WKSTRQIHFHCILCNGENHEEYDKVPIEVKHPLHPRHSLQLAVRQWSEEETMIECYCCDE
YLMDYYYYCSSCDFAMNVSCLEKPPPVLSIDHPKWHQHPLILFPSQASFPCNLCALTHSS
CPFYICPPCDFVVHQKCLSLPHVIRISRHHHRISFTPSFEKGNWYCGICRKKMDNDYGGY
TCLKDGCSYVAHSRCATQKNVWDGLDLEGEPEEVEEEEVEPFVIISDGTIHHFSHPHHLR
MDKNTGRDYDENKQCQACITPIYFGNIYSCMQCNFILHEECANFSRKIHNPIHPHKLNLV
GGYDGVTKYYKDFCSVCPRMCTNGFFYECGKEECDRFKLHVQCATISEPLVHESHVHPLF
LTSKPRERRRCGVCKKKPLSHTETFNCIEGECTFALCFGCATLPHEVRYKHDKHMLTLSY
GEETSTMMYWCEACEKEINSEERFYKCDEYCCVTLHIQCLIGKELYLKPGSSFEYDHRHA
DVLLKTQVMSRPICFQCKSRCPHNTVIQWSELVYCTIHCFLFGRLRWDEEERRRKQAEID
NKDV

GenBank annotation

    4525..6828    F17N18.20

BLASTX cluster

    4756..6759    cluster 2    47 hits for protein gene

BLASTN cluster

    None

GENSCAN

    4525..6825    gene model 2
    4525..6825    gene model 2
    Suboptimal exon

        4687..6825    Sngl    Phase: 0    Score: 0.324
        4741..6825    Sngl    Phase: 0    Score: 0.140

Grail

    4525..4611    exon    Phase: 0    Score: 61
    4687..5356    exon    Phase: 0    Score: 84
    5914..6725    exon    Phase: 0    Score: 86

Exon-Intron boundary candidatates

Acceptor
4537 [0.007] (0) 4600 [0.012] (0) 4797 [0.003] (2) 4823 [0.004] (1)
4886 [0.002] (1) 4909 [0.010] (0) 4946 [0.004] (1) 4983 [0.034] (2)
4991 [0.004] (1) 5099 [0.001] (1) 5135 [0.003] (1) 5266 [0.001] (0)
5276 [0.002] (1) 5314 [0.002] (0) 5430 [0.001] (2) 5465 [0.034] (1)
5512 [0.013] (0) 5610 [0.007] (2) 5746 [0.002] (0) 5810 [0.003] (1)
5934 [0.005] (2) 6032 [0.001] (1) 6140 [0.007] (1) 6150 [0.004] (2)
6208 [0.001] (0) 6220 [0.005] (0) 6362 [0.007] (1) 6584 [0.001] (1)
6598 [0.001] (0) 6627 [0.002] (2) 6655 [0.060] (0) 6771 [0.94N/0.006] (2)
Donor
4599 [0.016] (0) 4611 [1.00N/0.367] (0) 4744 [0.032] (1) 4757 [0.74N/0.013] (2)
4774 [0.006] (1) 4791 [0.011] (0) 5170 [0.861] (1) 5177 [0.270] (2)
5255 [0.003] (2) 5265 [0.015] (0) 5277 [0.008] (0) 5330 [0.016] (2)
5356 [0.011] (1) 5424 [0.017] (0) 5506 [0.81N/0.009] (1) 5684 [0.012] (2)
5692 [0.005] (1) 5756 [0.005] (2) 5986 [0.89N/0.051] (1) 6001 [0.017] (1)
6116 [0.005] (2) 6181 [0.011] (1) 6361 [0.93N/0.789] (1) 6411 [0.017] (0)
6416 [0.009] (2) 6601 [0.004] (1) 6654 [0.90N/0.060] (0) 6682 [1.00N/0.078] (1)
6719 [0.009] (2) 6725 [0.005] (2)

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