information on F17N18
(2895..2563)
Direction: -
Frame: 2
ORF
3345..1393 (Met: 3312 2976 2898 2817 2799 2742 2532 2481 2436 2271 2229 1866 1779 1749 1635 1623 1581 1479 1446)
HLTLRTVCFVDMSSPSSHANNNDLLNEEVKVQTSVGKKRTETQRSSSDHQLKPRKKLSQS
SDIRQYFVPKDDDKESTNRTRNDIGRCELFKAYQESSEDKALTSGNPTSLKCDQDEFIRT
VSEMIVLSGLPFSFVESEGFRRFCHNVIPMYEDVSRQTVAKDIAVIYLQEKSFLKVMFSV
NKMRVSLTTDIWEAPTTSSSYMVVTAYWIDANWELQKRIISFKPVLDKKGETIARRLIEC
LDEWGIEKVFTVTVNNAEGNDHEALTLFQDAMRLKGANALVKDGDFLRMRCCGHIVNLLV
KDSMEHVSDSIVAVRNAVKYVQSSLSRIKSFEFRIETGKVPKGNLSLDSVTEWNSTYLML
VAALKLRVAFDKMLGEDKLYGKYFLEIEEETGEKRVGPPVSATWDEVERLVTFLGIFFNC
TVESSERKAAASSKGYSEIATIDWNLIKLSNNVDEEVRKEATSIKDKFEKYWDGLININP
LVIVASVFDPRKKMKFTSLCFDRLHGKDSLESKNLTLSITSVMRHLYEEYTIMLDKQSQS
DDAAIQSDHRGSEQSGECDGYISSDYLYKEMINEMRKEQAGKELDDYLMEKAEPWCSGSD
YDVLSWWKRNIRTTQSCQNWLEMFLLFKCLLLLMSPLFALVVESWTRIEVL
GenBank annotation
3984..1268 F17N18.10
BLASTX cluster
3036..1334 cluster 1 3 hits for protein gene
BLASTN cluster
None
GENSCAN
3984..1267 gene model 1
Grail
3312..1390 exon Phase: 0 Score: 99
Exon-Intron boundary candidatates
| Acceptor |
| 1424 [0.004] (1) |
1547 [0.002] (1) |
1553 [0.005] (1) |
1604 [0.009] (1) |
| 1734 [0.59N/0.012] (0) |
1760 [0.001] (1) |
1837 [0.548] (2) |
2042 [0.001] (1) |
| 2057 [0.004] (1) |
2069 [0.019] (1) |
2181 [0.005] (0) |
2183 [0.82N/0.360] (1) |
| 2261 [0.037] (1) |
2339 [0.114] (1) |
2379 [0.003] (0) |
2437 [0.019] (2) |
| 2441 [0.001] (1) |
2520 [0.004] (0) |
2538 [0.54N/0.031] (0) |
2591 [0.003] (1) |
| 2621 [0.097] (1) |
2657 [0.001] (1) |
2666 [0.002] (1) |
2697 [0.059] (0) |
| 2729 [0.023] (1) |
2799 [0.013] (0) |
2809 [0.001] (2) |
2820 [0.117] (0) |
| 2930 [0.003] (1) |
2962 [0.004] (2) |
2984 [0.031] (1) |
3072 [0.001] (0) |
| 3135 [0.006] (0) |
3249 [0.033] (0) |
3263 [0.001] (1) |
3314 [0.86N/0.183] (1) |
| Donor |
| 1497 [0.022] (1) |
1521 [0.006] (1) |
1605 [0.611] (1) |
1667 [0.216] (2) |
| 1680 [0.93N/0.950] (1) |
1812 [0.92N/0.310] (1) |
1830 [0.92N/0.089] (1) |
1978 [0.033] (0) |
| 2037 [0.033] (1) |
2043 [0.091] (1) |
2116 [0.289] (0) |
2120 [0.88N/0.895] (2) |
| 2205 [0.115] (1) |
2223 [0.005] (1) |
2245 [0.052] (0) |
2329 [0.023] (0) |
| 2390 [0.139] (2) |
2428 [0.045] (0) |
2439 [0.003] (1) |
2484 [0.004] (1) |
| 2496 [0.034] (1) |
2510 [0.009] (2) |
2528 [0.004] (2) |
2571 [0.020] (1) |
| 2821 [0.007] (0) |
2854 [0.004] (0) |
2897 [0.008] (2) |
2908 [0.006] (0) |
| 2986 [0.012] (0) |
3033 [0.90N/0.016] (1) |
3087 [0.055] (1) |
3328 [0.004] (0) |
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