information on F17N18
(14961..14812)
Direction: -
Frame: 2
ORF
15372..14512 (Met: 15300 15222 14868 14841 14838 14826 14763 14682 14646 14625)
VYKCGPYFSLLLIKNSEEKKHDREMENNPRSSSSLPLAGRVAIVTGATRGMGREIAIHLH
SLGARVTINYVSSSSKAELLVSELNDSSQLKSAIAVKADVSDPDQINNLFDQTEQEFGSK
VHIVVNCAGVLDPKYPSLSETTLEDFDNTFTINTRGSFLCCKEAAKRVMRGGGGRIIMMS
TSMVGGLAPGYGVYAASKAAVETMVKVLAKELKGSRITANCVAPGPVATEMFYAGKSDET
VKMLAGACPMGRIGESKDITEIVGFLAGDGGEWINGQVIRANGGFVV
GenBank annotation
15300..14509 F17N18.70
BLASTX cluster
15303..14515 cluster 4 4 hits for protein gene
BLASTN cluster
15216..14614 cluster 6 2 hits for EST
GENSCAN
26302..12272 gene model 4
Suboptimal exon
15300..14613 Init Phase: 0 Score: 0.456
Grail
15300..14509 exon Phase: 0 Score: 99
Exon-Intron boundary candidatates
Acceptor |
14582 [0.005] (1) |
14636 [0.193] (1) |
14733 [0.010] (0) |
14742 [0.001] (0) |
14786 [0.016] (1) |
14886 [0.005] (0) |
14987 [0.320] (1) |
15032 [0.003] (1) |
15077 [0.049] (1) |
15086 [0.008] (1) |
15095 [0.014] (1) |
15099 [0.003] (0) |
15125 [0.021] (1) |
15242 [0.004] (1) |
15248 [0.030] (1) |
15260 [0.006] (1) |
15323 [0.116] (1) |
Donor |
14547 [0.96N/0.005] (1) |
14562 [0.007] (1) |
14587 [0.005] (0) |
14613 [0.069] (1) |
14695 [0.006] (0) |
14988 [0.084] (1) |
15186 [0.005] (1) |
15216 [0.003] (1) |
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