information on F17N18    (28466..29111)

Direction: +

Frame: 3

ORF

    28449..29129  (Met: 28752 28782 28920 28959 29058)
LEHACRSIRNSTYRRKLGFFSSCSTGNPIDDCWRCDKKWHRRRKRLADCAIGFGRNAVGG
RDGRYYIVTDPSDHDPVTPKPGTLRYAVIQDEPLWIVFKRDMVITLSQELIMNSFKTIDG
RGVNVHIAGGACLTVQYVTNIIIHGINIHDCKRTGNAMVRSSESHYGWRTMADGDGISIF
GSSHIWIDHNSLSSCADGLIDAIMGSTAITISNNYLTHHNEVRYFFH

GenBank annotation

    27176..30271    F17N18.100

BLASTX cluster

    27505..30268    cluster 6    39 hits for protein gene

BLASTN cluster

    None

GENSCAN

    27176..30833    gene model 5
    27176..30833    gene model 5
    Suboptimal exon

        28466..28911    Intr    Phase: 2    Score: 0.132
        28466..28968    Intr    Phase: 2    Score: 0.120
        28466..29111    Intr    Phase: 2    Score: 0.338

Grail

    28466..28974    exon    Phase: 2    Score: 89
    29050..29111    exon    Phase: 1    Score: 36

Exon-Intron boundary candidatates

Acceptor
28466 [0.89N/0.247] (2) 28481 [0.006] (2) 28493 [0.001] (2) 28525 [0.055] (1)
28790 [0.016] (2) 28831 [0.003] (1) 28905 [0.001] (0) 28928 [0.006] (2)
29050 [0.004] (1)
Donor
28479 [0.007] (1) 28501 [0.005] (2) 28629 [0.005] (1) 28692 [0.013] (1)
28702 [0.469] (2) 28754 [0.038] (0) 28850 [0.015] (0) 28855 [0.379] (2)
28899 [0.013] (1) 28947 [0.005] (1) 28968 [0.071] (1) 28974 [0.827] (1)
29111 [1.00N/0.957] (0)

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