information on F17I23    (87427..87296)

Direction: -

Frame: 3

ORF

    88558..87107  (Met: 88522 88501 88048 87616 87595 87508 87451 87256 87166)
VFLFLFLFSLKLMKFSRENMKWVFPEIKTTQNFLSPSSLPQEPPLSLRSSANFDLNSKIS
PSILLIIIILSIIFFISGLLHLLVRFLLTPSSRDREDYFDNVTALQGQLQQLFHLHDSGV
DQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLS
HSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASDHSSREIGGDRDSAACVAANDDIDVSS
AHLGLVGNNDLGSTRIDSGHGDQYLDGELGGSVGKVVPFSVKLGKFRNIDIGEGTSSNNN
IGNSSSLDERRCFSMGSYEYIMDEETTLKVHVSTKKQSSKNRGLPGHRTAMSECGFDPTG
RLKFSGSGSMRIVEEAAEKNVVERESFSVSKIWLRGKKEKHSKVQGKEDSSLVSSSSGRA
FSFRLSNQRNHPDAMIESGCEEDNQKCENSESLETKTPSFARRTMLWLAGRQNKVVHSSS
STNV

GenBank annotation

    None

BLASTX cluster

    87926..87235    cluster 13    1 hits for protein gene

BLASTN cluster

    None

GENSCAN

    88501..87107    gene model 19
    Suboptimal exon

        88501..87107    Sngl    Phase: 0    Score: 0.169
        88239..88108    Intr    Phase: 1    Score: 0.104
        88308..88108    Intr    Phase: 1    Score: 0.218

Grail

    87995..87104    exon    Phase: 2    Score: 87
    88501..87104    exon    Phase: 0    Score: 85

Exon-Intron boundary candidatates

Acceptor
87150 [0.065] (1) 87173 [0.002] (2) 87274 [0.009] (0) 87287 [0.870] (2)
87302 [0.002] (2) 87464 [0.004] (2) 87480 [0.011] (1) 87515 [0.004] (2)
87571 [0.013] (0) 87641 [0.003] (2) 87678 [0.011] (1) 87690 [0.008] (1)
87698 [0.003] (2) 87708 [0.013] (1) 87717 [0.200] (1) 87794 [0.035] (2)
87839 [0.003] (2) 87911 [0.004] (2) 87989 [0.87N/0.012] (2) 87995 [0.77N/0.725] (2)
88061 [0.002] (2) 88079 [0.016] (2) 88092 [0.087] (1) 88116 [0.97N/0.439] (1)
88304 [0.365] (2) 88308 [0.018] (1) 88482 [0.019] (1)
Donor
87137 [0.96N/0.736] (0) 87222 [0.003] (2) 87355 [0.006] (1) 87495 [0.091] (2)
87627 [0.015] (2) 87655 [0.74N/0.021] (1) 87734 [0.398] (0) 87743 [0.020] (0)
87748 [0.032] (1) 87751 [0.004] (1) 87760 [0.068] (1) 87874 [0.006] (1)
88179 [0.74N] (2) 88375 [0.016] (1)

[help]


Entrance