information on F17I23
(87235..87116)
Direction: -
Frame: 3
ORF
88558..87107 (Met: 88522 88501 88048 87616 87595 87508 87451 87256 87166)
VFLFLFLFSLKLMKFSRENMKWVFPEIKTTQNFLSPSSLPQEPPLSLRSSANFDLNSKIS
PSILLIIIILSIIFFISGLLHLLVRFLLTPSSRDREDYFDNVTALQGQLQQLFHLHDSGV
DQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLS
HSTCPLCRSSLLSDLSSHQDPRSSFLLVLESASDHSSREIGGDRDSAACVAANDDIDVSS
AHLGLVGNNDLGSTRIDSGHGDQYLDGELGGSVGKVVPFSVKLGKFRNIDIGEGTSSNNN
IGNSSSLDERRCFSMGSYEYIMDEETTLKVHVSTKKQSSKNRGLPGHRTAMSECGFDPTG
RLKFSGSGSMRIVEEAAEKNVVERESFSVSKIWLRGKKEKHSKVQGKEDSSLVSSSSGRA
FSFRLSNQRNHPDAMIESGCEEDNQKCENSESLETKTPSFARRTMLWLAGRQNKVVHSSS
STNV
GenBank annotation
None
BLASTX cluster
87926..87235 cluster 13 1 hits for protein gene
BLASTN cluster
None
GENSCAN
88501..87107 gene model 19
Suboptimal exon
88501..87107 Sngl Phase: 0 Score: 0.169
88239..88108 Intr Phase: 1 Score: 0.104
88308..88108 Intr Phase: 1 Score: 0.218
Grail
87995..87104 exon Phase: 2 Score: 87
88501..87104 exon Phase: 0 Score: 85
Exon-Intron boundary candidatates
Acceptor |
87150 [0.065] (1) |
87173 [0.002] (2) |
87274 [0.009] (0) |
87287 [0.870] (2) |
87302 [0.002] (2) |
87464 [0.004] (2) |
87480 [0.011] (1) |
87515 [0.004] (2) |
87571 [0.013] (0) |
87641 [0.003] (2) |
87678 [0.011] (1) |
87690 [0.008] (1) |
87698 [0.003] (2) |
87708 [0.013] (1) |
87717 [0.200] (1) |
87794 [0.035] (2) |
87839 [0.003] (2) |
87911 [0.004] (2) |
87989 [0.87N/0.012] (2) |
87995 [0.77N/0.725] (2) |
88061 [0.002] (2) |
88079 [0.016] (2) |
88092 [0.087] (1) |
88116 [0.97N/0.439] (1) |
88304 [0.365] (2) |
88308 [0.018] (1) |
88482 [0.019] (1) |
Donor |
87137 [0.96N/0.736] (0) |
87222 [0.003] (2) |
87355 [0.006] (1) |
87495 [0.091] (2) |
87627 [0.015] (2) |
87655 [0.74N/0.021] (1) |
87734 [0.398] (0) |
87743 [0.020] (0) |
87748 [0.032] (1) |
87751 [0.004] (1) |
87760 [0.068] (1) |
87874 [0.006] (1) |
88179 [0.74N] (2) |
88375 [0.016] (1) |
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Entrance