information on F17I23    (27118..27186)

Direction: +

Frame: 1

ORF

    27052..27867  (Met: 27238 27466 27619 27661 27694 27706)
LSSYILKRSIHHSLFFPLCFYQIVGAIWYLLALERYNGCWTKVCSNSSLDCHRNFLFCGN
EKMDGYAAWTTIKDSVLQLNCPVNTTDNPPFDFGIYLRALSSGIVSSKSFVSKYFFCLWW
GLQNLRYVILKNPSSIVIMKSLCCISNFVDVKCSTLGQGLETSTYPGEVIFSIALAIAGL
LLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETR
GVDEENLVQNLPKDLRRDIKRHLCLALVRRVS

GenBank annotation

    None

BLASTX cluster

    25918..28535    cluster 4    16 hits for protein gene

BLASTN cluster

    None

GENSCAN

    22270..28613    gene model 5
    Suboptimal exon

        27118..27428    Intr    Phase: 0    Score: 0.456
        27489..27861    Intr    Phase: 2    Score: 0.168
        27513..27861    Intr    Phase: 2    Score: 0.360

Grail

    26815..27051    exon    Phase: 0    Score: 54
    27238..27428    exon    Phase: 0    Score: 86
    27466..27861    exon    Phase: 0    Score: 86

Exon-Intron boundary candidatates

Acceptor
27118 [0.93N/0.850] (0) 27186 [0.002] (2) 27195 [0.004] (2) 27210 [0.002] (2)
27254 [0.021] (1) 27299 [0.003] (1) 27429 [0.040] (2) 27489 [0.007] (2)
27513 [0.86N/0.119] (2) 27527 [0.005] (1) 27625 [0.027] (0) 27686 [0.006] (1)
27691 [0.033] (0) 27799 [0.013] (0)
Donor
27177 [0.141] (0) 27184 [0.004] (1) 27226 [0.011] (1) 27428 [1.00N/0.961] (2)
27432 [0.038] (0) 27732 [0.011] (0) 27758 [0.007] (2) 27852 [0.087] (0)
27861 [1.00N/0.994] (0)

[help]


Entrance