information on F17I23
(27085..27183)
Direction: +
Frame: 1
ORF
27052..27867 (Met: 27238 27466 27619 27661 27694 27706)
LSSYILKRSIHHSLFFPLCFYQIVGAIWYLLALERYNGCWTKVCSNSSLDCHRNFLFCGN
EKMDGYAAWTTIKDSVLQLNCPVNTTDNPPFDFGIYLRALSSGIVSSKSFVSKYFFCLWW
GLQNLRYVILKNPSSIVIMKSLCCISNFVDVKCSTLGQGLETSTYPGEVIFSIALAIAGL
LLFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRMLPPELRERVRRYDQYKWLETR
GVDEENLVQNLPKDLRRDIKRHLCLALVRRVS
GenBank annotation
None
BLASTX cluster
25918..28535 cluster 4 16 hits for protein gene
BLASTN cluster
None
GENSCAN
22270..28613 gene model 5
Suboptimal exon
27118..27428 Intr Phase: 0 Score: 0.456
27489..27861 Intr Phase: 2 Score: 0.168
27513..27861 Intr Phase: 2 Score: 0.360
Grail
26815..27051 exon Phase: 0 Score: 54
27238..27428 exon Phase: 0 Score: 86
27466..27861 exon Phase: 0 Score: 86
Exon-Intron boundary candidatates
Acceptor |
27118 [0.93N/0.850] (0) |
27186 [0.002] (2) |
27195 [0.004] (2) |
27210 [0.002] (2) |
27254 [0.021] (1) |
27299 [0.003] (1) |
27429 [0.040] (2) |
27489 [0.007] (2) |
27513 [0.86N/0.119] (2) |
27527 [0.005] (1) |
27625 [0.027] (0) |
27686 [0.006] (1) |
27691 [0.033] (0) |
27799 [0.013] (0) |
Donor |
27177 [0.141] (0) |
27184 [0.004] (1) |
27226 [0.011] (1) |
27428 [1.00N/0.961] (2) |
27432 [0.038] (0) |
27732 [0.011] (0) |
27758 [0.007] (2) |
27852 [0.087] (0) |
27861 [1.00N/0.994] (0) |
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