information on F17I23    (105951..105811)

Direction: -

Frame: 1

ORF

    105951..104620  (Met: 105843 105840 105558 105522 105450 104757)
TKDQQIVELQKKWNDLCLRLHPNQSVSERIAPSTLSMMKINTRSDITPPGSPVGTDLVLG
RPNRGLSSPEKKTREARFGKLGDSFDIDLFKKLLKGLAKSVWWQHDAASSVAAAITECKH
GNGKSKGDIWLMFTGPDRAGKSKMASALSDLVSGSQPITISLGSSSRMDDGLNIRGKTAL
DRFAEAVRRNPFAVIVLEDIDEADILLRNNVKIAIERGRICDSYGREVSLGNVIIILTAN
SSLGSAKNVASIDETRLESLVNKGWELRLSVCNSSKTRKRKPNWLYSDNDQTKQRKEICF
DLNEAAEFDSSSDVTVEHDQEDNGNLVHKLVGLVDDAILFRPVDFDSIKSKTAESLKKRF
SNGLADGLTVEIEDDALERIAGAIWLSKISLEEWLEEAMGSSLNSVKSRVSSSEDSVIRI
ELEDDLNDRISGGYLPSSIRTVVV

GenBank annotation

    None

BLASTX cluster

    107559..105238    cluster 16    2 hits for protein gene

BLASTN cluster

    104920..104498    cluster 16    2 hits for EST
    105657..105352    cluster 17    1 hits for EST

GENSCAN

    107559..104620    gene model 23

Grail

    105951..104617    exon    Phase: 0    Score: 89

Exon-Intron boundary candidatates

Acceptor
104681 [0.003] (1) 104695 [0.009] (2) 104782 [0.002] (2) 104807 [0.170] (1)
104904 [0.002] (0) 104929 [0.001] (2) 104948 [0.006] (1) 105005 [0.027] (1)
105035 [0.006] (1) 105091 [0.001] (2) 105127 [0.009] (2) 105130 [0.054] (2)
105260 [0.003] (1) 105315 [0.003] (0) 105356 [0.003] (1) 105416 [0.012] (1)
105451 [0.032] (2) 105457 [0.002] (2) 105487 [0.001] (2) 105542 [0.005] (1)
105548 [0.71N/0.871] (1) 105639 [0.054] (0) 105652 [0.003] (2) 105659 [0.016] (1)
105666 [0.005] (0) 105675 [0.016] (0) 105860 [0.002] (1) 105921 [0.213] (0)
105936 [0.042] (0) 105944 [0.002] (1) 105951 [0.96N/0.937] (0)
Donor
104626 [0.018] (0) 104629 [0.012] (0) 104643 [0.003] (1) 104654 [0.74N/0.131] (2)
104754 [0.009] (1) 104793 [0.143] (1) 104808 [0.202] (1) 105256 [0.010] (0)
105271 [0.839] (0) 105276 [0.019] (1) 105284 [0.009] (2) 105373 [0.019] (0)
105394 [0.014] (0) 105492 [0.018] (1) 105591 [0.107] (1) 105759 [0.044] (1)

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