information on F16J13    (53891..53655)

Direction: -

Frame: 1

ORF

    54557..53460  (Met: 54476 54257 54230 54185 54131 54029 53993 53951 53717 53660 53609 53594 53591 53573 53564)
KHYYSFPLLSRVSPRSNYQNQFSSQHRMDPVQSHGSQSSLPPPFHARDFQLHLQQQQQHQ
QQHQQQQQQQFFLHHHQQPQRNLDQDHEQQGGSILNRSIKMDREETSDNMDNIANTNSGS
EGKEMSLHGGEGGSGGGGSGEQMTRRPRGRPAGSKNKPKAPIIITRDSANALRTHVMEIG
DGCDIVDCMATFARRRQRGVCVMSGTGSVTNVTIRQPGSPPGSVVSLHGRFEILSLSGSF
LPPPAPPAATGLSVYLAGGQGQVVGGSVVGPLLCSGPVVVMAASFSNAAYERLPLEEDEM
QTPVQGGGGGGGGGGGMGSPPMMGQQQAMAAMAAAQGLPPNLLGSVQLPPPQQNDQQYWS
TGRPPY

GenBank annotation

    54476..53457    F16J13.120

BLASTX cluster

    54414..53504    cluster 15    17 hits for protein gene

BLASTN cluster

    None

GENSCAN

    54476..53460    gene model 9

Grail

    54476..53457    exon    Phase: 0    Score: 99

Exon-Intron boundary candidatates

Acceptor
53516 [0.029] (0) 53566 [0.002] (1) 53654 [0.080] (0) 53665 [0.004] (1)
53700 [0.002] (2) 53812 [0.002] (1) 53938 [0.045] (1) 53976 [0.001] (2)
54019 [0.003] (1) 54131 [0.005] (0) 54163 [0.001] (1) 54193 [0.001] (1)
54204 [0.002] (2) 54267 [0.012] (2) 54466 [0.005] (1) 54477 [0.96N] (2)
54513 [0.055] (2) 54525 [0.062] (2)
Donor
53464 [0.74N/0.331] (2) 53474 [0.334] (1) 53482 [0.006] (2) 53528 [0.008] (1)
53754 [0.012] (0) 53762 [0.104] (1) 53772 [0.277] (0) 53869 [0.049] (2)
53886 [0.152] (0) 54194 [0.195] (1) 54283 [0.055] (2)

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