information on F16J13    (39744..39854)

Direction: +

Frame: 3

ORF

    39711..40919  (Met: 39726 39768 39951 40047 40059 40236 40392 40602 40737)
TLKLLMIIPLFQSLEKLKKMRLSYSDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISY
LKKLVFLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEISPNVKELYMGGTMIQE
IPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCLR
FLDLSRTDIKELPSSISYLTALDELLFVDSRRNSPVVTNPNANSTELMPSESSKLEILGT
PADNEVVVGGTVEKTRGIERTPTILVKSREYLIPDDVVAVGGDIKGLRPPVLQLQPAMKL
SHIPRGSTWDFVTHFAPPETVAPPSSSSEAREEEVETEETGAMFIPLGDKETCSFTVNKG
DSSRTISNTSPIYASEGSFITCWQKGQLLGRGSLGSVYEGISA

GenBank annotation

    34974..42787    F16J13.90

BLASTX cluster

    40398..42745    cluster 12    65 hits for protein gene

BLASTN cluster

    None

GENSCAN

    34974..42784    gene model 7
    Suboptimal exon

        39897..40918    Intr    Phase: 0    Score: 0.263

Grail

    39768..40922    exon    Phase: 0    Score: 87

Exon-Intron boundary candidatates

Acceptor
39720 [0.001] (0) 39747 [0.88N/0.158] (0) 39850 [0.013] (1) 39900 [0.002] (0)
39921 [0.359] (0) 39964 [0.001] (1) 40002 [0.026] (0) 40006 [0.051] (1)
40195 [0.68N/0.567] (1) 40222 [0.002] (1) 40265 [0.001] (2) 40268 [0.699] (2)
40273 [0.012] (1) 40336 [0.69N/0.014] (1) 40343 [0.079] (2) 40426 [0.019] (1)
40438 [0.006] (1) 40450 [0.001] (1) 40468 [0.001] (1) 40566 [0.008] (0)
40672 [0.036] (1) 40696 [0.008] (1) 40703 [0.006] (2) 40788 [0.001] (0)
40840 [0.001] (1) 40863 [0.019] (0) 40866 [0.002] (0)
Donor
39849 [0.007] (1) 40050 [0.007] (1) 40249 [0.070] (2) 40407 [0.265] (1)
40425 [0.011] (1) 40458 [0.012] (1) 40479 [0.006] (1) 40580 [0.006] (0)
40778 [0.008] (0) 40894 [0.95N/0.285] (2) 40898 [0.015] (0) 40918 [1.00N/0.953] (2)

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