information on AP22    (8165..8344)

Direction: +

Frame: 2

ORF

    8138..8533  (Met: 8165 8234)
LRKNKKTKDMEFLLFLGCITVFLYAGKGLLLPMGWLTKILKGSSHKFSDGQCNGRYREDR
NLEGPRYSAVSELYCFLVHFELKIKGFLEFLIQEGSDFDKEEIECAIALSLSEQEHVIPQ
DDKGKKIIGNVV

GenBank annotation

    8165..10851    C7A10.500

BLASTX cluster

    8165..10848    cluster 1    1 hits for protein gene

BLASTN cluster

    None

GENSCAN

    1560..15852    gene model 1
    Suboptimal exon

        8165..8213    Init    Phase: 0    Score: 0.456
        8165..8344    Init    Phase: 0    Score: 0.267
        8234..8344    Init    Phase: 0    Score: 0.121
        8262..8344    Intr    Phase: 1    Score: 0.430
        8387..8522    Intr    Phase: 0    Score: 0.282

Grail

    8214..8344    exon    Phase: 1    Score: 84
    8417..8536    exon    Phase: 0    Score: 76

Exon-Intron boundary candidatates

Acceptor
8199 [0.086] (1) 8214 [0.69N/0.958] (1) 8308 [0.004] (2) 8387 [0.011] (0)
8394 [0.003] (1) 8417 [0.95N/0.573] (0) 8421 [0.002] (1)
Donor
8213 [0.519] (1) 8261 [0.030] (1) 8327 [0.103] (1) 8344 [1.00N/0.904] (0)
8348 [0.006] (1) 8368 [0.004] (0) 8485 [0.93N/0.066] (0) 8522 [0.98N/0.020] (1)

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