information on AP22    (41765..41346)

Direction: -

Frame: 2

ORF

    42104..41328  (Met: 41945 41747 41480)
NLPEEANIGVDSWCVSVDTANRWGKSFAKKNQKLITTTTDLVDEVWKSRPPSEMSPVVVH
PLEFAGRSVSHKFEDLRAKLKQEGARGLVIAALDEVCFRSKKISLFLSSALECILIGGLM
QVAWLYNIRGTDVAYCPVVHAFAILTTDSAFLYVDKKKVSDEANSYFNGLGVEVREYTDV
ISDVALLASDRLISSFASKTVQHEAAKDMEIDSDQPDRLWVDPASCCYALYSKLDAEKVL
LQPSPISLSKALKVIKNDF

GenBank annotation

    42695..39437    C7A10.600

BLASTX cluster

    42695..39440    cluster 10    3 hits for protein gene

BLASTN cluster

    None

GENSCAN

    44775..39414    gene model 9
    Suboptimal exon

        41741..41346    Intr    Phase: 0    Score: 0.393
        42104..41820    Intr    Phase: 0    Score: 0.371

Grail

    41741..41325    exon    Phase: 0    Score: 88
    42104..41325    exon    Phase: 0    Score: 90

Exon-Intron boundary candidatates

Acceptor
41390 [0.013] (0) 41459 [0.003] (0) 41483 [0.001] (0) 41741 [0.95N/0.624] (0)
41776 [0.088] (1) 41781 [0.138] (2) 41881 [0.003] (1) 42039 [0.001] (2)
42052 [0.005] (1) 42079 [0.032] (1) 42091 [0.001] (1) 42104 [0.94N/0.041] (0)
Donor
41346 [0.96N/0.968] (0) 41391 [0.024] (0) 41742 [0.006] (0) 41807 [0.017] (1)
41820 [1.00N/0.789] (0) 41841 [0.011] (0) 41846 [0.008] (1) 41937 [0.005] (0)

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