information on AP22
(41765..41346)
Direction: -
Frame: 2
ORF
42104..41328 (Met: 41945 41747 41480)
NLPEEANIGVDSWCVSVDTANRWGKSFAKKNQKLITTTTDLVDEVWKSRPPSEMSPVVVH
PLEFAGRSVSHKFEDLRAKLKQEGARGLVIAALDEVCFRSKKISLFLSSALECILIGGLM
QVAWLYNIRGTDVAYCPVVHAFAILTTDSAFLYVDKKKVSDEANSYFNGLGVEVREYTDV
ISDVALLASDRLISSFASKTVQHEAAKDMEIDSDQPDRLWVDPASCCYALYSKLDAEKVL
LQPSPISLSKALKVIKNDF
GenBank annotation
42695..39437 C7A10.600
BLASTX cluster
42695..39440 cluster 10 3 hits for protein gene
BLASTN cluster
None
GENSCAN
44775..39414 gene model 9
Suboptimal exon
41741..41346 Intr Phase: 0 Score: 0.393
42104..41820 Intr Phase: 0 Score: 0.371
Grail
41741..41325 exon Phase: 0 Score: 88
42104..41325 exon Phase: 0 Score: 90
Exon-Intron boundary candidatates
Acceptor |
41390 [0.013] (0) |
41459 [0.003] (0) |
41483 [0.001] (0) |
41741 [0.95N/0.624] (0) |
41776 [0.088] (1) |
41781 [0.138] (2) |
41881 [0.003] (1) |
42039 [0.001] (2) |
42052 [0.005] (1) |
42079 [0.032] (1) |
42091 [0.001] (1) |
42104 [0.94N/0.041] (0) |
Donor |
41346 [0.96N/0.968] (0) |
41391 [0.024] (0) |
41742 [0.006] (0) |
41807 [0.017] (1) |
41820 [1.00N/0.789] (0) |
41841 [0.011] (0) |
41846 [0.008] (1) |
41937 [0.005] (0) |
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