information on AP22
(38522..38566)
Direction: +
Frame: 2
ORF
37793..39196 (Met: 37826 37862 37991 38084 38087 38123 38207 38264 38513 38756 38954 38987 38999 39077 39092 39116 39167)
RKHITKKTLRTMELHGALVASPGMGHAVPILELGKHLLNHHGFDRVTVFLVTDDVSRSKS
LIGKTLMEEDPKFVIRFIPLDVSGQDLSGSLLTKLAEMMRKALPEIKSSVMELEPRPRVF
VVDLLGTEALEVAKELGIMRKHVLVTTSAWFLAFTVYMASLDKQELYKQLSSIGALLIPG
CSPVKFERAQDPRKYIRELAESQRIGDEVITADGVFVNTWHSLEQVTIGSFLDPENLGRV
MRGVPVYPVGPLVRPAEPGLKHGVLDWLDLQPKESVVYVLLGVVGALTFEQTNELAYGLE
LTGHRFVWVVRPPAEDDPSASMFDKTKNETEPLDFLPNGFLDRTKDIGLVVRTWAPQEEI
LAHKSTGGFVTHCGWNSVLESIVNGVPMVAWPLYSEQKMNARMVSGELKIALQINVADGI
VKKEVIAEMVKRVMDEEEGKEMRKNVKELKKTAEEALNMTHIPSAYFT
GenBank annotation
37826..39199 C7A10.590
BLASTX cluster
37826..39196 cluster 9 3 hits for protein gene
BLASTN cluster
None
GENSCAN
37826..39196 gene model 8
Suboptimal exon
37862..39196 Sngl Phase: 0 Score: 0.106
Grail
37826..39199 exon Phase: 0 Score: 95
Exon-Intron boundary candidatates
Acceptor |
37950 [0.004] (1) |
38020 [0.085] (2) |
38049 [0.001] (1) |
38082 [0.007] (1) |
38096 [0.003] (0) |
38157 [0.004] (1) |
38250 [0.011] (1) |
38285 [0.087] (0) |
38300 [0.114] (0) |
38308 [0.003] (2) |
38313 [0.014] (1) |
38338 [0.003] (2) |
38430 [0.019] (1) |
38496 [0.009] (1) |
38562 [0.004] (1) |
38666 [0.007] (0) |
38707 [0.002] (2) |
38721 [0.043] (1) |
38725 [0.050] (2) |
38817 [0.008] (1) |
38961 [0.008] (1) |
38979 [0.006] (1) |
38984 [0.038] (0) |
39032 [0.006] (0) |
39045 [0.264] (1) |
39062 [0.001] (0) |
39086 [0.001] (0) |
Donor |
37892 [0.86N/0.041] (1) |
37917 [0.029] (2) |
37961 [0.006] (1) |
38019 [0.045] (2) |
38185 [0.007] (0) |
38224 [0.99N/0.056] (0) |
38416 [0.004] (0) |
38548 [0.032] (0) |
38567 [0.283] (1) |
38613 [0.025] (2) |
38684 [0.012] (1) |
38895 [0.269] (2) |
39001 [0.011] (0) |
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