information on AP22    (37835..37987)

Direction: +

Frame: 2

ORF

    37793..39196  (Met: 37826 37862 37991 38084 38087 38123 38207 38264 38513 38756 38954 38987 38999 39077 39092 39116 39167)
RKHITKKTLRTMELHGALVASPGMGHAVPILELGKHLLNHHGFDRVTVFLVTDDVSRSKS
LIGKTLMEEDPKFVIRFIPLDVSGQDLSGSLLTKLAEMMRKALPEIKSSVMELEPRPRVF
VVDLLGTEALEVAKELGIMRKHVLVTTSAWFLAFTVYMASLDKQELYKQLSSIGALLIPG
CSPVKFERAQDPRKYIRELAESQRIGDEVITADGVFVNTWHSLEQVTIGSFLDPENLGRV
MRGVPVYPVGPLVRPAEPGLKHGVLDWLDLQPKESVVYVLLGVVGALTFEQTNELAYGLE
LTGHRFVWVVRPPAEDDPSASMFDKTKNETEPLDFLPNGFLDRTKDIGLVVRTWAPQEEI
LAHKSTGGFVTHCGWNSVLESIVNGVPMVAWPLYSEQKMNARMVSGELKIALQINVADGI
VKKEVIAEMVKRVMDEEEGKEMRKNVKELKKTAEEALNMTHIPSAYFT

GenBank annotation

    37826..39199    C7A10.590

BLASTX cluster

    37826..39196    cluster 9    3 hits for protein gene

BLASTN cluster

    None

GENSCAN

    37826..39196    gene model 8
    Suboptimal exon

        37862..39196    Sngl    Phase: 0    Score: 0.106

Grail

    37826..39199    exon    Phase: 0    Score: 95

Exon-Intron boundary candidatates

Acceptor
37950 [0.004] (1) 38020 [0.085] (2) 38049 [0.001] (1) 38082 [0.007] (1)
38096 [0.003] (0) 38157 [0.004] (1) 38250 [0.011] (1) 38285 [0.087] (0)
38300 [0.114] (0) 38308 [0.003] (2) 38313 [0.014] (1) 38338 [0.003] (2)
38430 [0.019] (1) 38496 [0.009] (1) 38562 [0.004] (1) 38666 [0.007] (0)
38707 [0.002] (2) 38721 [0.043] (1) 38725 [0.050] (2) 38817 [0.008] (1)
38961 [0.008] (1) 38979 [0.006] (1) 38984 [0.038] (0) 39032 [0.006] (0)
39045 [0.264] (1) 39062 [0.001] (0) 39086 [0.001] (0)
Donor
37892 [0.86N/0.041] (1) 37917 [0.029] (2) 37961 [0.006] (1) 38019 [0.045] (2)
38185 [0.007] (0) 38224 [0.99N/0.056] (0) 38416 [0.004] (0) 38548 [0.032] (0)
38567 [0.283] (1) 38613 [0.025] (2) 38684 [0.012] (1) 38895 [0.269] (2)
39001 [0.011] (0)

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