information on AP22    (22505..21969)

Direction: -

Frame: 2

ORF

    22604..21936  (Met: 22529 22523 22520 22487 22460 22424 22328 22301 22280 22262 22256 22130 22034 22004)
LKSNSFSSLPFWDFDFSYFFFVLFVMVMMKKLLSNRLFNMSKTASQSLMNCRTSSSSSLA
MRTRVPKDIGEATIDPEPGDLTISQRFLNKFSMNGIDTTSKMSIGESLMEKLKEMDMNKD
RIRLDGLSHPKEETLGLTVQDVKKLLRAAEIEVIKTKLMETGKIWIRYSDFLGVCSDSSL
DPSQGALIAKMLDDSGNVIVMGNSVCLRPHQVTSSSSLLFFTI

GenBank annotation

    22529..21424    C7A10.540

BLASTX cluster

    22505..21427    cluster 5    2 hits for protein gene

BLASTN cluster

    None

GENSCAN

    22529..20253    gene model 3
    Suboptimal exon

        22520..21972    Init    Phase: 0    Score: 0.114

Grail

    22301..21933    exon    Phase: 0    Score: 86
    22529..21933    exon    Phase: 0    Score: 57

Exon-Intron boundary candidatates

Acceptor
22018 [0.027] (1) 22051 [0.002] (1) 22077 [0.011] (2) 22087 [0.010] (1)
22159 [0.004] (1) 22211 [0.008] (0) 22231 [0.001] (1) 22301 [0.001] (0)
22396 [0.075] (1) 22413 [0.002] (2) 22426 [0.001] (1) 22511 [0.011] (0)
22514 [0.013] (0) 22607 [0.001] (0)
Donor
21972 [1.00N/0.992] (0) 22088 [0.030] (1) 22348 [0.174] (2)

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Entrance