information on AP22
(22505..21969)
Direction: -
Frame: 2
ORF
22604..21936 (Met: 22529 22523 22520 22487 22460 22424 22328 22301 22280 22262 22256 22130 22034 22004)
LKSNSFSSLPFWDFDFSYFFFVLFVMVMMKKLLSNRLFNMSKTASQSLMNCRTSSSSSLA
MRTRVPKDIGEATIDPEPGDLTISQRFLNKFSMNGIDTTSKMSIGESLMEKLKEMDMNKD
RIRLDGLSHPKEETLGLTVQDVKKLLRAAEIEVIKTKLMETGKIWIRYSDFLGVCSDSSL
DPSQGALIAKMLDDSGNVIVMGNSVCLRPHQVTSSSSLLFFTI
GenBank annotation
22529..21424 C7A10.540
BLASTX cluster
22505..21427 cluster 5 2 hits for protein gene
BLASTN cluster
None
GENSCAN
22529..20253 gene model 3
Suboptimal exon
22520..21972 Init Phase: 0 Score: 0.114
Grail
22301..21933 exon Phase: 0 Score: 86
22529..21933 exon Phase: 0 Score: 57
Exon-Intron boundary candidatates
Acceptor |
22018 [0.027] (1) |
22051 [0.002] (1) |
22077 [0.011] (2) |
22087 [0.010] (1) |
22159 [0.004] (1) |
22211 [0.008] (0) |
22231 [0.001] (1) |
22301 [0.001] (0) |
22396 [0.075] (1) |
22413 [0.002] (2) |
22426 [0.001] (1) |
22511 [0.011] (0) |
22514 [0.013] (0) |
22607 [0.001] (0) |
Donor |
21972 [1.00N/0.992] (0) |
22088 [0.030] (1) |
22348 [0.174] (2) |
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Entrance