information on AP22    (173733..174050)

Direction: +

Frame: 3

ORF

    172875..174110  (Met: 173064 173079 173100 173310 173352 173523 173541 173763 173817 173877 173952 174108)
IVEDYVSHSSIFYKRLLSNCGLCCIAYIDANTFLFGFILALRSTLDSDIASKGRIYHETY
GCQMNINDMEIVLAIMKNSGYKEVVTDPESAEVIFVNTCAIRENAEQRVWQRLNYFWFLK
REWKVNAATGRAKSLKPPKVVVLGCMAERLKDKILDSDKMVDVVCGPDAYRDLPRLLEEV
DYGQKGINTLLSLEETYADISPVRISENSITAFVSVMRGCNNMCAFCIVPFTRGRERSRP
VESIIREVGELWESGVKEVTLLGQNVNSYNDDSADRESGANWEYSEGFSSRCKVKNMGLR
FADLLDRLSVEFPEMRFRFTSPHPKDYPDELLYLMRDRHNICNLIHLPAQSGNSRILEQM
RRGYTREAYLDLVKKIRSIIPDVAITSDFITGKPTQNLYVTCLRIGLLRILM

GenBank annotation

    172642..174673    C7A10.970

BLASTX cluster

    172878..174628    cluster 41    2 hits for protein gene

BLASTN cluster

    None

GENSCAN

    173079..174670    gene model 35
    127799..139538    gene model 28
    Suboptimal exon

        172951..174048    Intr    Phase: 1    Score: 0.561

Grail

    173079..174090    exon    Phase: 0    Score: 86

Exon-Intron boundary candidatates

Acceptor
172901 [0.042] (2) 172951 [0.002] (1) 172960 [0.015] (1) 173000 [0.022] (2)
173003 [0.013] (2) 173032 [0.003] (1) 173064 [0.047] (0) 173122 [0.001] (1)
173128 [0.003] (1) 173263 [0.046] (1) 173387 [0.86N/0.239] (2) 173389 [0.001] (1)
173455 [0.003] (1) 173458 [0.001] (1) 173530 [0.61N/0.001] (1) 173573 [0.177] (2)
173579 [0.010] (2) 173599 [0.001] (1) 173662 [0.003] (1) 173678 [0.007] (2)
173695 [0.004] (1) 173710 [0.036] (1) 173806 [0.001] (1) 173815 [0.011] (1)
173828 [0.001] (2) 173939 [0.088] (2) 174000 [0.001] (0) 174019 [0.078] (1)
Donor
173031 [0.013] (1) 173058 [0.003] (1) 173198 [0.011] (0) 173246 [0.007] (0)
173307 [0.017] (1) 173421 [0.006] (1) 173480 [0.74N] (0) 173615 [0.025] (0)
173637 [0.025] (1) 173700 [0.003] (1) 173709 [0.013] (1) 173727 [0.008] (1)
173746 [0.004] (2) 173748 [0.007] (1) 173766 [0.011] (1) 173827 [0.017] (2)
173928 [0.023] (1) 173961 [0.062] (1) 174048 [1.00N/0.890] (1) 174071 [0.74N/0.009] (0)

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