information on AP22
(163586..164765)
Direction: +
Frame: 2
ORF
163337..164768 (Met: 163502 163679 163801 164283 164691 164700 163730 163804 163812 163829 164191 164295 164360 164440)
LFAFPLIIYLHPNLANTNSVSYSSKSFPINTFFFPSYFISLTTKSSHFLIFLLKVMARLT
SFLLLLSLICFVPLCLCDKSYGGKLFPGYYAHSCPQVNEIVRSVVAKAVARETRMAASLL
RLHFHDCFVQV*NFFYVSTFYVVLSLLAKQGNCEM*L*ALCF*SSGRVATEKNSNPNSKS
ARGFDVVDQIKAELEKQCPGTVSCADVLTLAARDSSVLVSFLHNLYFLEPKLKHQLTRLV
FGLDRWTKLGCSIGKKRFKKCKLESIEQQHPCTKQHFPDHSI*LTVKDLISLTLSLSPVS
FRHSITVSCFTHMEHN*KIHYTLLASQATTLLKCYLR*TQSDSRDARVSDRGCTTSPETA
VQT*LEQSFAANLRQRCPKSGGDQILSVLDIISAASFDNSYFKNLIENKGLLNSDQVLFS
SNEKSRELVKKYAEDQGEFFEQFAESMIKMGNISPLTGSSGEIRKNCRKINS
GenBank annotation
163502..164771 C7A10.930
BLASTX cluster
163565..164798 cluster 37 21 hits for protein gene
BLASTN cluster
163504..164967 cluster 32 2 hits for EST
GENSCAN
163502..165698 gene model 32
Grail
163502..163726 exon Phase: 0 Score: 86
164075..164240 exon Phase: 0 Score: 89
Exon-Intron boundary candidatates
| Acceptor |
| 163380 [0.003] (1) |
163574 [0.001] (0) |
163653 [0.001] (1) |
163727 [0.002] (0) |
| 163773 [0.044] (1) |
163790 [0.036] (0) |
163807 [0.514] (2) |
163832 [0.90N/0.132] (0) |
| 163836 [0.076] (1) |
163839 [0.61N/0.039] (1) |
163904 [0.001] (0) |
164075 [0.86N/0.111] (0) |
| 164110 [0.001] (2) |
164266 [0.003] (2) |
164359 [0.87N/0.607] (2) |
164363 [0.005] (0) |
| 164399 [0.021] (0) |
164403 [0.029] (1) |
164612 [0.006] (0) |
164615 [0.039] (0) |
| 164653 [0.002] (2) |
164725 [0.124] (2) |
164756 [0.005] (0) |
| Donor |
| 163598 [0.030] (1) |
163636 [0.008] (0) |
163676 [0.85N/0.067] (1) |
163726 [0.92N/0.528] (0) |
| 163789 [0.025] (0) |
163892 [0.005] (1) |
163998 [1.00N/0.391] (2) |
164240 [1.00N/0.525] (1) |
| 164358 [0.019] (2) |
164644 [0.049] (0) |
164724 [0.032] (2) |
[help]
Entrance