information on AP22    (63358..61901)

Direction: -

Frame: 3

ORF

    63634..61901  (Met: 63358 63277 63262 63253 63235 62614 62491 62458 62443 62221 62089 62056)
KTESYTNHCQSDCFVYKYYSVKPNKPGSDTVTKVEISLFARTHSKIKSLPLSPFKSPATF
FFSHTQRKKTERKKLFFFSLKAPPFFLLNTQHMKIPASSPQDTTNNNNNTNSTDSNHLSM
DEHVMRSMDWDSIMKELELDDDSAPNSLKTGFTTTTTDSTILPLYAVDSNLPGFPDQIQP
SDFESSSDVYPGQNQTTGYGFNSLDSVDNGGFDFIEDLIRVVDCVESDELQLAQVVLSRL
NQRLRSPAGRPLQRAAFYFKEALGSFLTGSNRNPIRLSSWSEIVQRIRAIKEYSGISPIP
LFSHFTANQAILDSLSSQSSSPFVHVVDFEIGFGGQYASLMREITEKSVSGGFLRVTAVV
AEECAVETRLVKENLTQFAAEMKIRFQIEFVLMKTFEMLSFKAIRFVEGERTVVLISPAI
FRRLSGITDFVNNLRRVSPKVVVFVDSEGWTEIAGSGSFRREFVSALEFYTMVLESLDAA
APPGDLVKKIVEAFVLRPKISAAVETAADRRHTGEMTWREAFCAAGMRPIQQSQFADFQA
ECLLEKAQVRGFHVAKRQGELVLCWHGRALVATSAWRF

GenBank annotation

    63358..61898    C7A10.650

BLASTX cluster

    63358..61901    cluster 14    1 hits for protein gene

BLASTN cluster

    63306..62953    cluster 13    1 hits for EST

GENSCAN

    63358..61901    gene model 12
    Suboptimal exon

        63391..61901    Term    Phase: 0    Score: 0.196

Grail

    63600..61898    exon    Phase: 1    Score: 84

Exon-Intron boundary candidatates

Acceptor
61995 [0.001] (1) 62105 [0.012] (2) 62121 [0.012] (1) 62137 [0.001] (0)
62289 [0.063] (1) 62294 [0.027] (2) 62410 [0.004] (0) 62420 [0.436] (2)
62427 [0.019] (1) 62473 [0.002] (0) 62559 [0.057] (1) 62568 [0.003] (1)
62570 [0.037] (2) 62779 [0.003] (0) 62854 [0.003] (0) 62875 [0.002] (0)
62932 [0.016] (0) 62985 [0.048] (1) 63017 [0.002] (2) 63055 [0.009] (0)
63103 [0.005] (0) 63391 [0.069] (0) 63491 [0.001] (2) 63600 [0.035] (1)
Donor
61905 [0.011] (2) 62034 [0.006] (2) 62421 [0.010] (2) 62591 [0.015] (0)
62808 [0.014] (2) 62845 [0.067] (1) 62890 [0.038] (1) 62933 [0.013] (0)
63037 [0.007] (1) 63042 [0.88N/0.325] (2) 63061 [0.042] (1) 63292 [0.009] (1)
63545 [0.005] (0)

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