Jatropha Genome Database

JcCB0902031.10 (JcS_100720.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0902031
Scaffold:
JcS_100720 JcCB0902031(-) =JcCA0268211(-) =JcCA0152031(-) =JcCB0028271(-) =JcCA0311281(-) =JcCB0466631(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9R8Q6_RICCO 427 90.1 95.5 (tr|B9R8Q6) Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1601650 PE=4 SV=1
Arabidopsis_pep AT1G20780.1 282 66.7 83.8 | Symbols: PUB44, ATPUB44, SAUL1 | SAUL1 (SENESCENCE-ASSOCIATED E3 UBIQUITIN LIGASE 1); ubiquitin-protein ligase | chr1:7217812-7220609 FORWARD
soybean_pep Glyma06g01920.1 376 77.9 89.2  
Medicago_pep IMGA|Medtr7g145720.1 104 35.4 54.5 U box chr07_pseudomolecule_IMGAG_V3 34731262-34725440 E EGN_Mt090430 20090702
grape_pep GSVIVT01013395001 378 78.9 90.6  
castor_bean_cds 30170.m014229 716 88.7 88.7 ubiquitin-protein ligase, putative
castor_bean_pep 30170.m014229 427 90.1 95.5 ubiquitin-protein ligase, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c03594 908 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0902031.10 length: 223 aa.
IPR000225 Armadillo
method AccNumber shortName E-value location
HMMSmart SM00185 no description 11 139-179
181-221
IPR003613 U box domain
Cellular Component GO:0000151 ubiquitin ligase complex    
Molecular Function GO:0004842 ubiquitin-protein ligase activity    
Biological Process GO:0016567 protein ubiquitination    
HMMPfam PF04564 U-box 8.2e-17 30-105
HMMSmart SM00504 no description 1.3e-26 32-100
IPR011989 Armadillo-like helical
Molecular Function GO:0005488 binding    
Gene3D G3DSA:1.25.10.10 no description 1.7e-09 113-223
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 2e-20 74-221
no_ID  
Gene3D G3DSA:3.30.40.10 no description 2.1e-18 25-107
HMMPanther PTHR22849 WDSAM1 2.9e-10 29-115
HMMPfam PF10508 Proteasom_PSMB 0.00015 132-223
superfamily SSF57850 RING/U-box 1.5e-10 10-100