Jatropha Genome Database

JcCB0860891.10 (JcS_102671.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0860891
Scaffold:
JcS_102671 JcCB0860891(+) =JcCA0119481(+) =JcCB0274991(+) =JcCB0351501(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q5U6E3_BETVU 149 92.3 96.2 (tr|Q5U6E3) Ribosomal protein S13 OS=Beta vulgaris subsp. vulgaris GN=rps13 PE=3 SV=1
Arabidopsis_pep AT1G77750.1 51.2 39.7 63.2 | Symbols: | 30S ribosomal protein S13, chloroplast, putative | chr1:29230346-29231490 REVERSE
soybean_pep Glyma02g08540.3 64.3 45.1 67.6  
Medicago_pep IMGA|Medtr4g110840.2 64.7 42.5 68.5 Ribosomal protein S13 chr04_pseudomolecule_IMGAG_V3 25243393-25241336 F EGN_Mt090430 20090702
grape_pep GSVIVT01008933001 48.1 37.7 56.5  
castor_bean_cds --No_Hits--        
castor_bean_pep 29908.m006203 50.8 39.1 58.0 30S ribosomal protein S13, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c00067 464 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0860891.10 length: 78 aa.
IPR001892 Ribosomal protein S13
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMPIR PIRSF002134 Ribosomal 2.6e-13 1-78
HMMPfam PF00416 Ribosomal_S13 1.9e-23 1-71
ProfileScan PS50159 RIBOSOMAL_S13_2 27.029 1-74
IPR010979 Ribosomal protein S13-like, H2TH
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF46946 S13-like 4.4e-19 1-75
IPR018269 Ribosomal protein S13, conserved site
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
PatternScan PS00646 RIBOSOMAL_S13_1 NA 50-63
no_ID  
Gene3D G3DSA:4.10.910.10 no description 7.1e-11 35-73
HMMPanther PTHR10871 30S/40S 1.6e-27 1-77
HMMPanther PTHR10871:SF1 30S 1.6e-27 1-77