Jatropha Genome Database

JcCB0819751.10 (JcS_100508.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0819751
Scaffold:
JcS_100508 JcCB0012961(+) =JcCA0314441(+) =JcCB0819751(-) =JcCB0464881(-) =JcCB0125571(+) =JcCA0284691(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A5C1A0_VITVI 700 74.6 85.0 (tr|A5C1A0) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041111 PE=4 SV=1
Arabidopsis_pep AT1G06710.1 587 63.6 77.9 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:2057279-2060119 REVERSE
soybean_pep Glyma11g01110.1 607 70.4 84.1  
Medicago_pep IMGA|Medtr5g007390.1 574 63.5 78.5 Pentatricopeptide repeat chr05_pseudomolecule_IMGAG_V3 1084076-1088286 H EGN_Mt090430 20090702
grape_pep GSVIVT01013571001 699 74.6 85.0  
castor_bean_cds 30063.m001431 375 87.4 87.4 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 40173.m000012 347 67.8 78.2 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0819751.10 length: 486 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.014 202-219
235-263
275-292
302-331
336-366
373-401
454-477
HMMTigr TIGR00756 PPR: 2.2e-05 199-233
234-268
269-300
301-335
336-370
371-405
406-446
447-481
ProfileScan PS51375 PPR 5.448 197-231
232-266
299-333
267-297
334-368
369-403
445-479
404-444
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 7.7e-65 185-485
Seg seg seg NA 5-20
superfamily SSF48452 TPR-like 1.1e-15 201-474