Jatropha Genome Database

JcCB0815741.10 (JcS_111816.40)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0815741
Scaffold:
JcS_111816 JcCB0088711(+) =JcCB0815741(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q9AU17_SOLCI 315 74.1 83.9 (tr|Q9AU17) Polyprotein-like OS=Solanum chilense PE=4 SV=1
Arabidopsis_pep ATMG00710.1 79.3 50.7 73.2 | Symbols: ORF120 | hypothetical protein | chrM:207553-207915 REVERSE
soybean_pep Glyma10g21320.1 210 49.7 68.4  
Medicago_pep IMGA|Medtr8g044140.1 135 36.5 56.2 Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H EGN_Mt090430 20090702
grape_pep GSVIVT01028612001 190 48.9 61.6  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests gi|268516533|gb|FM889693.1|FM889693 541 94.4 94.4 FM889693 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003410, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0815741.10 length: 524 aa.
IPR001584 Integrase, catalytic core
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0015074 DNA integration    
HMMPfam PF00665 rve 5.1e-26 331-428
ProfileScan PS50994 INTEGRASE 20.171 290-475
IPR012337 Polynucleotidyl transferase, ribonuclease H fold
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 1.3e-35 305-467
no_ID  
Gene3D G3DSA:3.30.420.10 no description 7.1e-28 332-463
HMMPanther PTHR11439 GAG-POL-RELATED 5.2e-85 331-523