Jatropha Genome Database

JcCB0760911.10 (JcS_100044.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0760911
Scaffold:
JcS_100044 JcCB0760911(+) =JcCB0892281(+) =JcPR03BRZWZ(+) =JcCA0279321(+) =JcCA0259681(-) =JcCB0434201(-) =JcCB0411911(+) =JcCA0128121(-) =JcCB0013521(-) =JcCB0463071(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9HI13_POPTR 96.7 84.3 86.3 (tr|B9HI13) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_656369 PE=4 SV=1
Arabidopsis_pep AT3G12680.1 69.3 76.6 83.0 | Symbols: HUA1 | HUA1 (ENHANCER OF AG-4 1); RNA binding | chr3:4025276-4028999 REVERSE
soybean_pep Glyma08g25050.1 84.3 79.5 90.9  
Medicago_pep IMGA|Medtr8g109990.1 50.4 58.8 70.6 Zinc finger, CCCH-type chr08_pseudomolecule_IMGAG_V3 24821248-24817227 E EGN_Mt090430 20090702
grape_pep GSVIVT01036686001 85.5 80.0 88.9  
castor_bean_cds 29593.m000174 115 85.7 85.7 conserved hypothetical protein
castor_bean_pep 29593.m000174 90.9 87.0 95.7 conserved hypothetical protein
JAT_13201ests gi|268523133|gb|FM894716.1|FM894716 131 98.6 98.6 FM894716 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_000554, mRNA sequence
KJC_r1 KJC_c06610 50.1 86.8 86.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0760911.10 length: 68 aa.
IPR000571 Zinc finger, CCCH-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF00642 zf-CCCH 1.3e-09 1-19
ProfileScan PS50103 ZF_C3H1 13.291 1-21