Jatropha Genome Database

JcCB0735771.10 (JcS_102588.10)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0735771
Scaffold:
JcS_102588 JcCB0735771(+) =JcCA0012121(+) =JcCB0983611(-) =JcCB0126091(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SC90_RICCO 369 92.1 97.4 (tr|B9SC90) DNA polymerase OS=Ricinus communis GN=RCOM_1409950 PE=3 SV=1
Arabidopsis_pep AT5G67100.1 293 74.6 88.4 | Symbols: ICU2 | ICU2 (INCURVATA2); DNA-directed DNA polymerase | chr5:26776994-26785104 FORWARD
soybean_pep Glyma01g39430.1 303 74.2 87.9  
Medicago_pep IMGA|Medtr5g017000.1 325 77.4 89.5 DNA-directed DNA polymerase B chr05_pseudomolecule_IMGAG_V3 6066040-6054333 E EGN_Mt090430 20090702
grape_pep GSVIVT01022113001 297 76.8 85.8  
castor_bean_cds 30115.m001231 607 88.7 88.7 DNA polymerase alpha catalytic subunit, putative
castor_bean_pep 30115.m001231 369 92.1 97.4 DNA polymerase alpha catalytic subunit, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0735771.10 length: 206 aa.
IPR006133 DNA-directed DNA polymerase, family B, exonuclease domain
method AccNumber shortName E-value location
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006260 DNA replication    
HMMPfam PF03104 DNA_pol_B_exo 3.7e-15 44-157
IPR006172 DNA-directed DNA polymerase, family B
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0003887 DNA-directed DNA polymerase activity    
Biological Process GO:0006139 nucleobase, nucleoside, nucleotide and nucleic acid metabolic process    
HMMPanther PTHR10322 DNA 4.6e-67 3-190
IPR012337 Polynucleotidyl transferase, ribonuclease H fold
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 9.2e-24 50-190
no_ID  
Gene3D G3DSA:3.30.420.10 no description 2.6e-08 47-184
HMMPanther PTHR10322:SF3 DNA 4.6e-67 3-190