Jatropha Genome Database

JcCB0733091.10 (JcS_101589.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0733091
Scaffold:
JcS_101589 JcCA0154411(+) =JcCB0365731(+) =JcCB0733091(-) =JcCB0303641(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9SV86_RICCO 145 91.9 98.6 (tr|B9SV86) Gaba(A) receptor-associated protein, putative OS=Ricinus communis GN=RCOM_1302610 PE=3 SV=1
Arabidopsis_pep AT1G62040.1 139 94.2 98.6 | Symbols: ATG8C | ATG8C (autophagy 8c); microtubule binding | chr1:22933216-22934253 FORWARD
soybean_pep Glyma06g46270.3 140 95.7 98.6  
Medicago_pep IMGA|Medtr2g104190.1 138 91.5 95.8 Light chain 3 (LC3) chr02_pseudomolecule_IMGAG_V3 24505007-24508014 E EGN_Mt090430 20090702
grape_pep GSVIVT01037666001 140 97.1 100.0  
castor_bean_cds 30064.m000481 281 92.9 92.9 gaba(A) receptor-associated protein, putative
castor_bean_pep 30064.m000482 145 91.9 98.6 gaba(A) receptor-associated protein, putative
JAT_13201ests gi|268518587|gb|FM888830.1|FM888830 283 100.0 100.0 FM888830 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002327, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0733091.10 length: 74 aa.
IPR004241 Light chain 3 (LC3)
method AccNumber shortName E-value location
HMMPanther PTHR10969 MICROTUBULE-ASSOCIATED 2.1e-54 1-70
HMMPfam PF02991 MAP1_LC3 8.3e-33 1-68
no_ID  
Gene3D G3DSA:3.10.20.90 no description 3.9e-25 1-68
HMMPanther PTHR10969:SF4 GABA(A) 2.1e-54 1-70
superfamily SSF54236 Ubiquitin-like 1e-27 1-68