Jatropha Genome Database

JcCB0691211.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0691211
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q9SEG8_CAPAN 127 100.0 100.0 (tr|Q9SEG8) MADS box transcription factor MADS1 OS=Capsicum annuum GN=MADS1 PE=2 SV=1
Arabidopsis_pep AT1G24260.1 124 98.4 100.0 | Symbols: SEP3, AGL9 | SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor | chr1:8593790-8595862 REVERSE
soybean_pep Glyma18g50900.1 125 98.4 100.0  
Medicago_pep IMGA|Medtr3g104190.1 125 98.4 100.0 Transcription factor, MADS-box; Transcription factor, K-box chr03_pseudomolecule_IMGAG_V3 25812647-25808917 E EGN_Mt090430 20090702
grape_pep GSVIVT01010521001 124 98.4 100.0  
castor_bean_cds 30174.m008934 85.7 81.4 81.4 mads box protein, putative
castor_bean_pep 30174.m008934 114 96.5 100.0 mads box protein, putative
JAT_13201ests gi|262091321|gb|GT228748.1|GT228748 109 89.5 89.5 JC313 Jatropha seeds from fruits at three stages of maturation Jatropha curcas cDNA clone PL06SE.E07.scf 5', mRNA sequence
KJC_r1 KJC_c11056 56.0 88.5 88.5  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0691211.10 length: 84 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
FPrintScan PR00404 MADSDOMAIN 1.1e-33 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 2.6e-30 9-59
HMMSmart SM00432 no description 1.3e-41 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 33.529 1-61
superfamily SSF55455 SRF-like 3.4e-28 1-61
no_ID  
HMMPanther PTHR11945 MADS 1.1e-44 10-61
HMMPanther PTHR11945:SF19 MADS 1.1e-44 10-61
Seg seg seg NA 69-77