Jatropha Genome Database

JcCB0646891.10 (JcS_100034.90)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0646891
Scaffold:
JcS_100034 JcCB0189361(+) =JcCA0199801(-) =JcCB0216831(+) =JcCA0149441(-) =JcCA0036251(+) =JcCA0047351(-) =JcCA0076481(-) =JcCB0268591(-) =JcCB0646891(-) =JcCA0075411(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7FBA7_VITVI 146 100.0 100.0 (tr|D7FBA7) Whole genome shotgun sequence of line PN40024, scaffold_0.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00008028001 PE=4 SV=1
Arabidopsis_pep AT5G39850.1 144 97.2 100.0 | Symbols: | 40S ribosomal protein S9 (RPS9C) | chr5:15950053-15951171 FORWARD
soybean_pep Glyma17g10710.1 141 97.2 98.6  
Medicago_pep IMGA|Medtr3g012940.1 137 94.4 98.6 Ribosomal protein S4 chr03_pseudomolecule_IMGAG_V3 2297351-2295367 E EGN_Mt090430 20090702
grape_pep GSVIVT01011384001 146 100.0 100.0  
castor_bean_cds 30147.m014108 246 89.6 89.6 40S ribosomal protein S9, putative
castor_bean_pep 29822.m003493 146 100.0 100.0 40S ribosomal protein S9, putative
JAT_13201ests gi|268516676|gb|FM890383.1|FM890383 365 100.0 100.0 FM890383 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_004229, mRNA sequence
KJC_r1 KJC_c00293 428 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0646891.10 length: 72 aa.
IPR001912 Ribosomal protein S4
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0019843 rRNA binding    
HMMPanther PTHR11831 30S 1.5e-47 1-72
HMMPfam PF00163 Ribosomal_S4 5.5e-08 1-43
IPR002942 RNA-binding S4
Molecular Function GO:0003723 RNA binding    
HMMPfam PF01479 S4 1e-07 44-72
IPR018079 Ribosomal protein S4, conserved site
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0019843 rRNA binding    
PatternScan PS00632 RIBOSOMAL_S4 NA 42-66
no_ID  
HMMPanther PTHR11831:SF3 40S 1.5e-47 1-72
superfamily SSF55174 Alpha-L 2.3e-14 1-72