Jatropha Genome Database

JcCB0574741.10 (JcS_100386.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0574741
Scaffold:
JcS_100386 JcCD0203831(+) =JcPR04GQDJ3(-) =JcCB0574741(+) =JcCB0074501(+) =JcCA0152731(+) =JcCA0146281(-) =JcCB0589691(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SBE2_RICCO 398 74.5 82.5 (tr|B9SBE2) WD-repeat protein, putative OS=Ricinus communis GN=RCOM_0716410 PE=4 SV=1
Arabidopsis_pep AT1G64610.2 304 58.3 75.2 | Symbols: | WD-40 repeat family protein | chr1:23998920-24001297 REVERSE
soybean_pep Glyma06g13660.1 335 64.6 77.2  
Medicago_pep IMGA|Medtr1g008870.1 341 63.0 76.4 WD-40 repeat family protein, related chr01_pseudomolecule_IMGAG_V3 939949-943595 E EGN_Mt090430 20090702
grape_pep GSVIVT01027183001 383 71.9 81.4  
castor_bean_cds 29742.m001383 567 85.0 85.0 WD-repeat protein, putative
castor_bean_pep 29742.m001383 398 74.5 82.5 WD-repeat protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c11341 125 84.4 84.4  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0574741.10 length: 260 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
HMMSmart SM00320 no description 0.12 20-59
124-162
165-204
206-245
IPR011046 WD40 repeat-like-containing domain
superfamily SSF50978 WD40 2.2e-43 23-247
IPR015943 WD40/YVTN repeat-like-containing domain
Gene3D G3DSA:2.130.10.10 no description 6.9e-44 27-258
IPR017986 WD40-repeat-containing domain
ProfileScan PS50294 WD_REPEATS_REGION 18.167 27-213
IPR019781 WD40 repeat, subgroup
HMMPfam PF00400 WD40 0.59 28-58
126-161
168-203
218-245
IPR019782 WD40 repeat 2
ProfileScan PS50082 WD_REPEATS_2 12.046 27-68
131-171
171-205
IPR020472 G-protein beta WD-40 repeat, region
FPrintScan PR00320 GPROTEINBRPT 2.1e-07 46-60
149-163
191-205
no_ID  
HMMPanther PTHR14221 WD 2.8e-102 2-251
Seg seg seg NA 187-198