Jatropha Genome Database

JcCB0549901.10 (JcS_101315.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0549901
Scaffold:
JcS_101315 JcCB0586831(+) =JcCA0148271(+) =JcCB0106211(+) =JcCB0880531(+) =JcCB0549901(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9T2X9_RICCO 171 73.5 85.8 (tr|B9T2X9) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0158910 PE=4 SV=1
Arabidopsis_pep AT3G59040.2 148 70.3 81.2 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr3:21821495-21823919 REVERSE
soybean_pep Glyma10g43150.1 156 72.0 85.0  
Medicago_pep IMGA|Medtr1g143580.1 137 69.8 84.4 Pentatricopeptide repeat chr01_pseudomolecule_IMGAG_V3 31747847-31742900 E EGN_Mt090430 20090702
grape_pep GSVIVT01020809001 156 71.0 83.2  
castor_bean_cds 28094.m000179 222 85.3 85.3 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 28094.m000179 171 73.5 85.8 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c05513 115 92.6 92.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0549901.10 length: 166 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 4.6e-06 1-31
37-66
HMMTigr TIGR00756 PPR: 5.5e-08 1-35
36-70
ProfileScan PS51375 PPR 10.698 1-33
34-68
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 2.8e-16 1-93
Seg seg seg NA 110-120
124-143