Jatropha Genome Database

JcCB0548251.10 (JcS_200119.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0548251
Scaffold:
JcS_200119 JcCD0182114(+) =JcCB0951551(+) =JcPR03DZZX0(-) =JcCB0548251(+) =JcCA0154071(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S3W2_RICCO 417 91.8 95.9 (tr|B9S3W2) TRANSPORT INHIBITOR RESPONSE 1 protein, putative OS=Ricinus communis GN=RCOM_0556140 PE=4 SV=1
Arabidopsis_pep AT3G62980.1 354 76.6 88.1 | Symbols: TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase | chr3:23273479-23276181 REVERSE
soybean_pep Glyma10g02630.1 370 80.3 90.8  
Medicago_pep IMGA|Medtr7g096650.1 251 55.7 71.7 Cyclin-like F-box chr07_pseudomolecule_IMGAG_V3 21663069-21659617 E EGN_Mt090430 20090702
grape_pep GSVIVT01010995001 380 83.0 92.2  
castor_bean_cds 29647.m002022 674 88.2 88.2 TRANSPORT INHIBITOR RESPONSE 1 protein, putative
castor_bean_pep 29647.m002022 417 91.8 95.9 TRANSPORT INHIBITOR RESPONSE 1 protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c00992 987 98.9 98.9  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0548251.10 length: 227 aa.
no_ID  
method AccNumber shortName E-value location
Gene3D G3DSA:3.80.10.10 no description 2.1e-12 1-209
HMMPanther PTHR23125 F-BOX/LEUCINE 1.1e-99 1-218
HMMPanther PTHR23125:SF17 GRR1-RELATED, 1.1e-99 1-218
superfamily SSF52047 RNI-like 3.7e-13 4-209