| JcS_100433 | JcCA0267531(-) =JcCB0429441(+) =JcCD0128967(-) =JcCB0064191(+) =JcCB0517161(+) =JcCB0284631(-) |
| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| trembl | B9S2W3_RICCO | 275 | 73.3 | 85.3 | (tr|B9S2W3) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0562960 PE=4 SV=1 |
| Arabidopsis_pep | AT1G77405.1 | 263 | 66.0 | 77.0 | | Symbols: | INVOLVED IN: biological_process unknown; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2745 (EMBRYO DEFECTIVE 2745) (TAIR:AT5G39710.1); Has 13180 Blast hits to 4377 proteins in 153 species: Archae - 4; Bacteria - 12; Metazoa - 210; Fungi - 191; Plants - 12251; Viruses - 0; Other Eukaryotes - 512 (source: NCBI BLink). | chr1:29087145-29088521 FORWARD |
| soybean_pep | Glyma19g27190.1 | 189 | 48.7 | 66.0 | |
| Medicago_pep | IMGA|Medtr3g136090.1 | 129 | 38.4 | 57.9 | Pentatricopeptide repeat chr03_pseudomolecule_IMGAG_V3 34232179-34230857 H EGN_Mt090430 20090702 |
| grape_pep | GSVIVT01008474001 | 233 | 66.7 | 74.7 | |
| castor_bean_cds | 29648.m002002 | 214 | 80.2 | 80.2 | pentatricopeptide repeat-containing protein, putative |
| castor_bean_pep | 29648.m002002 | 275 | 73.3 | 85.3 | pentatricopeptide repeat-containing protein, putative |
| JAT_13201ests | --No_Hits-- | ||||
| KJC_r1 | --No_Hits-- |
| JcCB0517161.20 | length: 217 aa. | |||
| IPR002885 | Pentatricopeptide repeat | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| HMMTigr | TIGR00756 | PPR: | 3.8e-06 | 133-167 173-207 |
| ProfileScan | PS51375 | PPR | 5.294 | 131-161 171-205 206-217 |
| no_ID | ||||
| HMMPanther | PTHR10483 | PENTATRICOPEPTIDE | 7.4e-16 | 119-217 |
| HMMPanther | PTHR10483:SF3 | SNF1-LIKE | 7.4e-16 | 119-217 |
| Seg | seg | seg | NA | 3-26 |