Jatropha Genome Database

JcCB0477071.10 (JcS_100623.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0477071
Scaffold:
JcS_100623 JcCB0477071(+) =JcCB0231591(+) =JcCA0068901(+) =JcCA0307381(+) =JcCA0312531(+) =JcCB0027381(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9IL57_POPTR 325 72.1 79.0 (tr|B9IL57) DNA-directed RNA polymerase OS=Populus trichocarpa GN=POPTRDRAFT_737361 PE=3 SV=1
Arabidopsis_pep AT3G18090.1 249 56.6 70.8 | Symbols: NRPD2B | NRPD2b; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding | chr3:6195323-6200204 FORWARD
soybean_pep Glyma04g06440.1 261 59.5 70.7  
Medicago_pep IMGA|Medtr3g138340.1 258 59.4 71.2 RNA polymerase Rpb2, domain 4; RNA polymerase Rpb2, domain 5; DNA-directed RNA polymerase, beta subunit chr03_pseudomolecule_IMGAG_V3 35357572-35364917 E EGN_Mt090430 20090702
grape_pep GSVIVT01035963001 306 68.6 77.3  
castor_bean_cds 29848.m004540 634 87.7 87.7 DNA-directed RNA polymerase subunit, putative
castor_bean_pep 29848.m004540 325 73.4 79.0 DNA-directed RNA polymerase subunit, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0477071.10 length: 231 aa.
IPR007646 RNA polymerase Rpb2, domain 4
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006350 transcription    
HMMPfam PF04566 RNA_pol_Rpb2_4 3.1e-23 72-134
IPR007647 RNA polymerase Rpb2, domain 5
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006350 transcription    
HMMPfam PF04567 RNA_pol_Rpb2_5 1.7e-10 148-195
IPR015712 DNA-directed RNA polymerase, subunit 2
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006350 transcription    
Molecular Function GO:0032549 ribonucleoside binding    
HMMPanther PTHR20856 DNA-DIRECTED 6.6e-98 11-231
no_ID  
Gene3D G3DSA:3.90.1100.10 no description 1e-10 23-229
HMMPanther PTHR20856:SF6 DNA-DIRECTED 6.6e-98 11-231
Seg seg seg NA 92-103
155-166
superfamily SSF64484 beta 6.9e-50 23-231