Jatropha Genome Database

JcCB0451681.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0451681
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl A9XBG7_POPTR 254 63.9 77.2 (tr|A9XBG7) Putative C-repeat binding protein 4 OS=Populus trichocarpa GN=CBF4 PE=4 SV=1
Arabidopsis_pep AT4G25470.1 192 50.8 69.2 | Symbols: CBF2, DREB1C, FTQ4, ATCBF2 | CBF2 (C-REPEAT/DRE BINDING FACTOR 2); DNA binding / transcription activator/ transcription factor | chr4:13015436-13016086 REVERSE
soybean_pep Glyma01g42500.1 203 57.1 73.3  
Medicago_pep IMGA|Medtr5g011090.1 196 53.2 64.9 Pathogenesis-related transcriptional factor and ERF chr05_pseudomolecule_IMGAG_V3 2908196-2909983 E EGN_Mt090430 20090702
grape_pep GSVIVT01019860001 208 59.9 68.3  
castor_bean_cds 30190.m011119 174 84.8 84.8 Dehydration-responsive element-binding protein 1A, putative
castor_bean_pep 30190.m011119 246 62.7 77.1 Dehydration-responsive element-binding protein 1A, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c13094 58.0 88.7 88.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0451681.10 length: 230 aa.
IPR001471 Pathogenesis-related transcriptional factor/ERF, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00367 ETHRSPELEMNT 1e-07 61-72
83-99
Gene3D G3DSA:3.30.730.10 no description 9.4e-21 59-120
HMMPfam PF00847 AP2 2.8e-14 59-109
HMMSmart SM00380 no description 1.3e-27 60-123
ProfileScan PS51032 AP2_ERF 21.957 60-117
IPR016177 DNA-binding, integrase-type
Molecular Function GO:0003677 DNA binding    
superfamily SSF54171 DNA-binding 2e-22 59-120
no_ID  
Seg seg seg NA 5-26
219-224