Jatropha Genome Database

JcCB0430531.10 (JcS_201922.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0430531
Scaffold:
JcS_201922 JcCB0302351(+) =JcCB0430531(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RLH8_RICCO 202 66.5 75.5 (tr|B9RLH8) Transcription factor BIM1, putative OS=Ricinus communis GN=RCOM_1467110 PE=4 SV=1
Arabidopsis_pep AT5G08130.3 134 55.6 68.8 | Symbols: | BIM1; DNA binding / protein binding / transcription factor | chr5:2606655-2608652 REVERSE
soybean_pep Glyma05g07490.1 161 53.5 68.4  
Medicago_pep IMGA|Medtr7g015360.1 101 44.5 59.7 Helix-loop-helix DNA-binding chr07_pseudomolecule_IMGAG_V3 3853072-3859438 E EGN_Mt090430 20090702
grape_pep GSVIVT01008164001 164 58.5 70.1  
castor_bean_cds 30138.m003913 202 87.4 87.4 Transcription factor BIM1, putative
castor_bean_pep 30138.m003913 202 66.5 75.5 Transcription factor BIM1, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c10613 394 99.5 99.5  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0430531.10 length: 155 aa.
IPR001092 Helix-loop-helix DNA-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF00010 HLH 4.4e-05 52-112
IPR011598 Helix-loop-helix DNA-binding
Cellular Component GO:0005634 nucleus    
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:4.10.280.10 no description 4.4e-07 46-138
superfamily SSF47459 HLH, 1.6e-09 51-138
no_ID  
Coil coil coiled-coil NA 108-129
Seg seg seg NA 76-85