Jatropha Genome Database

JcCB0425011.10 (JcS_105361.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0425011
Scaffold:
JcS_105361 JcCB0006821(+) =JcCB0425011(+) =JcCA0293801(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A9PIF9_POPTR 781 68.2 80.6 (tr|A9PIF9) Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1
Arabidopsis_pep AT1G64310.1 582 52.7 70.2 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:23866053-23867711 FORWARD
soybean_pep Glyma06g18870.1 625 56.5 70.8  
Medicago_pep IMGA|Medtr3g114590.1 632 56.7 71.4 Ribosomal protein L11; Sugar transporter superfamily chr03_pseudomolecule_IMGAG_V3 29061067-29059406 H EGN_Mt090430 20090702
grape_pep GSVIVT01007674001 637 59.5 70.9  
castor_bean_cds 30147.m013888 775 84.1 84.1 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 30147.m013888 577 75.1 84.2 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0425011.10 length: 555 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.011 71-97
171-200
273-296
346-373
374-404
410-436
HMMTigr TIGR00756 PPR: 0.0053 70-104
171-206
273-307
374-408
409-443
ProfileScan PS51375 PPR 5.426 68-102
169-203
138-168
103-137
271-305
372-406
341-371
306-340
407-441
475-509
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 4.3e-188 1-550
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 4.3e-188 1-550
Seg seg seg NA 128-146
superfamily SSF48452 TPR-like 1.9e-08 261-531
36-213