Jatropha Genome Database

JcCB0424111.10 (JcS_100388.80)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0424111
Scaffold:
JcS_100388 JcCA0101011(+) =JcCB0371021(-) =JcCB0104191(+) =JcCA0143421(-) =JcCA0306451(+) =JcCB0424111(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B6TRW3_MAIZE 184 81.7 91.3 (tr|B6TRW3) DNA-directed RNA polymerase subunit OS=Zea mays PE=3 SV=1
Arabidopsis_pep AT3G16980.1 179 81.7 90.4 | Symbols: NRPB9A, NRPD9A, NRPE9A | NRPB9A; DNA binding / DNA-directed RNA polymerase/ nucleic acid binding / transcription regulator/ zinc ion binding | chr3:5794526-5795699 FORWARD
soybean_pep Glyma09g04220.1 178 79.8 89.4  
Medicago_pep IMGA|Medtr2g038620.1 176 78.8 88.5 DNA-directed RNA polymerase, subunit C11/M/9 chr02_pseudomolecule_IMGAG_V3 10822895-10820021 F EGN_Mt090430 20090702
grape_pep GSVIVT01035016001 180 80.8 90.4  
castor_bean_cds 29889.m003276 242 88.0 88.0 DNA-directed RNA polymerase II, putative
castor_bean_pep 29889.m003276 169 75.0 85.6 DNA-directed RNA polymerase II, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0424111.10 length: 103 aa.
IPR001222 Zinc finger, TFIIS-type
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF01096 TFIIS_C 3.9e-10 65-102
HMMSmart SM00440 no description 0.00038 64-103
ProfileScan PS51133 ZF_TFIIS_2 11.737 62-102
IPR001529 DNA-directed RNA polymerase, M/15kDa subunit
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006350 transcription    
HMMPfam PF02150 RNA_POL_M_15KD 2.2e-06 1-29
HMMSmart SM00661 no description 2.8e-08 1-48
no_ID  
Gene3D G3DSA:2.20.25.10 no description 5.3e-17 1-36
37-101
HMMPanther PTHR11239 DNA-DIRECTED 2.3e-57 1-103
HMMPanther PTHR11239:SF1 DNA-DIRECTED 2.3e-57 1-103
superfamily SSF57783 Zinc 3.9e-12 40-103
1-39