Jatropha Genome Database

JcCB0421541.10 (JcS_105770.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0421541
Scaffold:
JcS_105770 JcCB0099951(+) =JcCB0421541(-) =JcCB0753831(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl C0SVP6_ARATH 209 57.3 64.3 (tr|C0SVP6) Putative uncharacterized protein At5g14750 (Fragment) OS=Arabidopsis thaliana GN=At5g14750 PE=2 SV=1
Arabidopsis_pep AT5G14750.1 209 57.3 64.3 | Symbols: WER, ATMYB66, WER1 | ATMYB66 (MYB DOMAIN PROTEIN 66); DNA binding / protein binding / transcription factor/ transcription regulator | chr5:4763656-4764738 REVERSE
soybean_pep Glyma20g32500.1 172 72.2 86.1  
Medicago_pep IMGA|Medtr8g024650.1 162 68.9 84.5 Homeodomain-like; chr08_pseudomolecule_IMGAG_V3 4684450-4686044 E EGN_Mt090430 20090702
grape_pep GSVIVT01032467001 208 79.2 83.8  
castor_bean_cds 29933.m001381 135 92.0 92.0 r2r3-myb transcription factor, putative
castor_bean_pep 28226.m000839 171 67.3 88.8 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c07843 54.0 90.7 90.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0421541.10 length: 195 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 3.1e-19 8-58
61-109
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 1.2e-10 9-78
68-118
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 3.1e-18 7-59
63-111
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 1.7e-17 9-56
62-107
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 2.8e-77 5-118
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 17.393 57-111
1-56
no_ID  
HMMPanther PTHR10641:SF31 GLABROUS 2.8e-77 5-118
Seg seg seg NA 126-140