Jatropha Genome Database

JcCB0411911.10 (JcS_100044.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0411911
Scaffold:
JcS_100044 JcCB0760911(+) =JcCB0892281(+) =JcPR03BRZWZ(+) =JcCA0279321(+) =JcCA0259681(-) =JcCB0434201(-) =JcCB0411911(+) =JcCA0128121(-) =JcCB0013521(-) =JcCB0463071(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7SW35_VITVI 210 62.6 77.4 (tr|D7SW35) Whole genome shotgun sequence of line PN40024, scaffold_31.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00022202001 PE=4 SV=1
Arabidopsis_pep AT2G22070.1 174 50.3 74.2 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:9383602-9385962 FORWARD
soybean_pep Glyma03g00230.1 182 53.8 75.0  
Medicago_pep IMGA|Medtr3g143210.1 129 39.2 63.4 Pentatricopeptide repeat chr03_pseudomolecule_IMGAG_V3 36886862-36889047 E EGN_Mt090430 20090702
grape_pep GSVIVT01022202001 210 62.6 77.4  
castor_bean_cds 28196.m000208 252 84.4 84.4 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 28196.m000208 192 78.6 86.3 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0411911.10 length: 169 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00015 50-73
78-106
109-138
HMMTigr TIGR00756 PPR: 1e-05 47-77
78-108
109-143
ProfileScan PS51375 PPR 6.675 76-110
45-75
10-44
111-141
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 3.7e-47 14-166
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 3.7e-47 14-166
Seg seg seg NA 4-11
superfamily SSF48452 TPR-like 7.6e-07 9-136