Jatropha Genome Database

JcCB0396891.10 (JcS_100596.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCB0396891
Scaffold:
JcS_100596 JcCB0396891(+) =JcCB0396881(+) =JcCB0229681(-) =JcCB0418191(-) =JcCB0610261(-) =JcCB0131911(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SB16_RICCO 260 63.9 79.4 (tr|B9SB16) Rhicadhesin receptor, putative OS=Ricinus communis GN=RCOM_1336550 PE=4 SV=1
Arabidopsis_pep AT3G05950.1 199 53.0 68.2 | Symbols: | germin-like protein, putative | chr3:1781130-1781964 REVERSE
soybean_pep Glyma08g08600.1 254 62.4 76.6  
Medicago_pep IMGA|AC147501_29.1 219 57.1 71.7 Germin AC147501.9 135731-137272 E EGN_Mt090430 20090702
grape_pep GSVIVT01021699001 246 61.2 76.0  
castor_bean_cds 30075.m001164 99.6 89.5 89.5 Rhicadhesin receptor precursor, putative
castor_bean_pep 30075.m001165 260 63.9 79.4 Rhicadhesin receptor precursor, putative
JAT_13201ests gi|268524483|gb|FM895163.1|FM895163 912 94.4 94.4 FM895163 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_001943, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCB0396891.10 length: 197 aa.
IPR001929 Germin
method AccNumber shortName E-value location
Molecular Function GO:0030145 manganese ion binding    
Cellular Component GO:0048046 apoplast    
FPrintScan PR00325 GERMIN 7.2e-23 89-109
121-141
154-169
IPR006045 Cupin 1
Molecular Function GO:0045735 nutrient reservoir activity    
HMMPfam PF00190 Cupin_1 6.2e-24 44-188
HMMSmart SM00835 no description 1.6e-29 41-191
IPR011051 Cupin, RmlC-type
superfamily SSF51182 RmlC-like 3.6e-49 3-197
IPR014710 RmlC-like jelly roll fold
Gene3D G3DSA:2.60.120.10 no description 1.5e-66 3-197
IPR019780 Germin, manganese binding site
Molecular Function GO:0030145 manganese ion binding    
Cellular Component GO:0048046 apoplast    
PatternScan PS00725 GERMIN NA 84-97